Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g049470.3 Solanum lycopersicum HOM05D000173 ORTHO05D005736 2.0e-12 74.3 34 100.0
Sopen12g023940 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-12 73.9 33 100.0
Nitab4.5_0008062g0010 Nicotiana tabacum HOM05D000173 ORTHO05D005736 1.6e-09 64.7 33 84.8
CAN.G623.72 Capsicum annuum HOM05D000173 ORTHO05D005736 4.6e-09 63.2 33 81.8
PGSC0003DMG400022148 Solanum tuberosum HOM05D000173 ORTHO05D005736 4.6e-09 63.2 33 81.8
Solyc07g066120.3 Solanum lycopersicum HOM05D000173 ORTHO05D005736 1.0e-08 62.0 33 78.8
Sopen07g034300 Solanum pennellii HOM05D000173 ORTHO05D005736 1.0e-08 62.0 33 78.8
CAN.G337.85 Capsicum annuum HOM05D000173 ORTHO05D005736 3.9e-08 60.1 33 75.8
SGA_v2.0_scaffold7G03547 Striga asiatica HOM05D000173 ORTHO05D005736 5.1e-08 59.7 32 75.0
Peaxi162Scf00232g00532 Petunia axillaris HOM05D000173 ORTHO05D005736 6.6e-08 59.3 33 75.8
ClCG10G004520 Citrullus lanatus HOM05D000173 ORTHO05D005736 8.6e-08 58.9 31 77.4
CANSAT11G1741 Cannabis sativa HOM05D000173 ORTHO05D005736 1.1e-07 58.5 31 74.2
Medtr3g010170 Medicago truncatula HOM05D000173 ORTHO05D005736 1.1e-07 58.5 33 72.7
Migut.M01585 Erythranthe guttata HOM05D000173 ORTHO05D005736 1.5e-07 58.2 33 75.8
MELO3C014127.2 Cucumis melo HOM05D000173 ORTHO05D005736 1.9e-07 57.8 31 74.2
CsaV3_3G004340 Cucumis sativus L. HOM05D000173 ORTHO05D005736 1.9e-07 57.8 31 74.2
HanXRQChr11g0335511 Helianthus annuus HOM05D000173 ORTHO05D005736 1.9e-07 57.8 33 69.7
HanXRQChr15g0488001 Helianthus annuus HOM05D000173 ORTHO05D005736 1.9e-07 57.8 33 69.7
TPR.G16712 Trifolium pratense HOM05D000173 ORTHO05D005736 1.9e-07 57.8 31 74.2
Ciclev10008155m.g Citrus clementina HOM05D000173 ORTHO05D005736 2.5e-07 57.4 31 71.0
Lj4g0017123 Lotus japonicus HOM05D000173 ORTHO05D005736 2.5e-07 57.4 31 74.2
Sed0017311 Sechium edule HOM05D000173 ORTHO05D005736 2.5e-07 57.4 31 74.2
Lj3g0003303 Lotus japonicus HOM05D000173 ORTHO05D005736 3.3e-07 57.0 31 74.2
Lalb_Chr04g0259451 Lupinus albus HOM05D000173 ORTHO05D005736 5.6e-07 56.2 31 71.0
VMungo1080G0826 Vigna mungo HOM05D000173 ORTHO05D005736 5.6e-07 56.2 31 74.2
DCAR_017607 Daucus carota HOM05D000173 ORTHO05D005736 7.3e-07 55.8 33 69.7
HanXRQChr11g0346941 Helianthus annuus HOM05D000173 ORTHO05D005736 7.3e-07 55.8 33 66.7
Nn1g07638 Nelumbo nucifera HOM05D000173 ORTHO05D005736 7.3e-07 55.8 30 80.0
PGR083G1684 Punica granatum HOM05D000173 ORTHO05D005736 7.3e-07 55.8 31 71.0
Ca_14141_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 9.5e-07 55.5 33 69.7
Ca_22541_v3 Cicer arietinum L. HOM05D000173 ORTHO05D005736 9.5e-07 55.5 31 71.0
Lalb_Chr09g0334651 Lupinus albus HOM05D000173 ORTHO05D005736 9.5e-07 55.5 31 67.7
Medtr8g070520 Medicago truncatula HOM05D000173 ORTHO05D005736 9.5e-07 55.5 31 71.0
TPR.G6164 Trifolium pratense HOM05D000173 ORTHO05D005736 9.5e-07 55.5 31 71.0
ECA236G0787 Erigeron canadensis HOM05D000173 ORTHO05D005736 1.2e-06 55.1 33 63.6
HanXRQChr08g0232901 Helianthus annuus HOM05D000173 ORTHO05D005736 1.2e-06 55.1 33 66.7
Psat5g231680 Pisum sativum HOM05D000173 ORTHO05D005736 1.2e-06 55.1 31 71.0
Hma1.2p1_0321F.1_g124320 Hydrangea macrophylla HOM05D000173 ORTHO05D005736 1.6e-06 54.7 33 69.7
GSVIVG01014840001 Vitis vinifera HOM05D000173 ORTHO05D005736 1.6e-06 54.7 33 72.7
MD00G1070700 Malus domestica HOM05D000173 ORTHO05D005736 2.1e-06 54.3 31 71.0
Potri.001G471700 Populus trichocarpa HOM05D000173 ORTHO05D005736 2.1e-06 54.3 33 69.7
arahy.Tifrunner.gnm1.ann1.1AZN13 Arachis hypogaea HOM05D000173 ORTHO05D005736 2.8e-06 53.9 31 67.7
arahy.Tifrunner.gnm1.ann1.D2KAQB Arachis hypogaea HOM05D000173 ORTHO05D005736 2.8e-06 53.9 31 71.0
arahy.Tifrunner.gnm1.ann1.YXC3CU Arachis hypogaea HOM05D000173 ORTHO05D005736 2.8e-06 53.9 31 67.7
TWI39G0957 Tripterygium wilfordii HOM05D000173 ORTHO05D005736 2.8e-06 53.9 31 71.0
Lsat_1_v5_gn_5_540 Lactuca sativa HOM05D000173 ORTHO05D005736 3.6e-06 53.5 33 63.6
Phvul.005G003800 Phaseolus vulgaris HOM05D000173 ORTHO05D005736 3.6e-06 53.5 31 71.0
Rhsim04G0007300 Rhododendron simsii HOM05D000173 ORTHO05D005736 3.6e-06 53.5 31 71.0
Sabra16G0320200 Salix brachista HOM05D000173 ORTHO05D005736 3.6e-06 53.5 33 69.7
Thecc.07G002000 Theobroma cacao HOM05D000173 ORTHO05D005736 3.6e-06 53.5 33 63.6
TAR626G0284 Trochodendron aralioides HOM05D000173 ORTHO05D005736 3.6e-06 53.5 31 71.0
MD03G1042500 Malus domestica HOM05D000173 ORTHO05D005736 4.7e-06 53.1 31 67.7
QL08p000620 Quercus lobata HOM05D000173 ORTHO05D005736 4.7e-06 53.1 31 64.5
VMungo0251G2140 Vigna mungo HOM05D000173 ORTHO05D005736 4.7e-06 53.1 31 64.5
arahy.Tifrunner.gnm1.ann1.9SE8JW Arachis hypogaea HOM05D000173 ORTHO05D005736 6.2e-06 52.8 31 67.7
MD11G1043600 Malus domestica HOM05D000173 ORTHO05D005736 6.2e-06 52.8 31 67.7
MD11G1045700 Malus domestica HOM05D000173 ORTHO05D005736 6.2e-06 52.8 31 67.7
Cc05_g15670 Coffea canephora HOM05D000173 ORTHO05D005736 8.1e-06 52.4 32 65.6
Gohir.A13G128700 Gossypium hirsutum HOM05D000173 ORTHO05D005736 8.1e-06 52.4 31 64.5
Gohir.D13G132100 Gossypium hirsutum HOM05D000173 ORTHO05D005736 8.1e-06 52.4 31 64.5
Gorai.013G148100 Gossypium raimondii HOM05D000173 ORTHO05D005736 8.1e-06 52.4 31 64.5


User provided reference genes

Program Settings