Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 2.0e-284 981.9 524 100.0
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 1.2e-273 946.0 524 96.9
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 7.3e-239 830.5 490 92.0
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 5.0e-187 658.3 573 65.4
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.0e-180 636.3 528 68.2
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 6.8e-144 515.0 446 65.0
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.6e-100 370.9 541 45.7
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 6.0e-100 369.0 541 45.5
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 2.6e-95 353.6 551 41.4
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 2.7e-92 343.6 561 42.4
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.8e-91 340.9 538 42.4
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 5.6e-90 335.9 525 43.8
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 1.3e-86 324.7 551 40.8
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.3e-86 324.7 553 42.1
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.4e-85 320.5 537 41.2
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 7.9e-84 315.5 549 39.7
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 7.9e-84 315.5 554 39.7
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 1.3e-81 308.1 564 39.4
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 2.8e-81 307.0 522 39.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.8e-80 304.3 545 39.1
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 1.5e-79 301.2 500 41.0
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.0e-79 300.8 552 39.3
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.3e-78 298.1 555 39.3
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.4e-77 294.7 547 38.4
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.5e-77 293.9 552 39.1
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 5.5e-77 292.7 541 38.4
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 2.7e-76 290.4 540 38.7
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.3e-75 287.3 567 37.2
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 3.9e-75 286.6 539 39.1
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 5.1e-75 286.2 572 37.2
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 5.7e-74 282.7 482 40.9
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 5.7e-74 282.7 538 39.0
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 5.7e-74 282.7 549 38.1
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 7.4e-74 282.3 538 38.8
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 4.8e-73 279.6 534 38.8
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 4.8e-73 279.6 518 39.2
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.4e-72 278.1 561 37.4
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 9.0e-72 275.4 562 37.7
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.9e-70 270.4 553 35.6
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 3.8e-70 270.0 561 38.1
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 6.5e-70 269.2 552 35.1
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.5e-69 267.3 547 37.7
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 4.2e-69 266.5 539 38.0
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.2e-68 265.0 537 40.8
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.7e-68 263.8 477 39.8
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 4.6e-68 263.1 528 37.1
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 8.8e-67 258.8 547 37.5
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.1e-66 258.5 564 34.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 2.4e-64 250.8 570 34.9
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 4.1e-64 250.0 475 38.1
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 5.3e-64 249.6 553 35.6
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.7e-62 244.6 557 34.3
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.2e-62 244.2 438 42.9
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.2e-62 244.2 553 35.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.1e-61 241.9 571 34.2
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.1e-61 241.9 528 37.3
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 4.2e-61 240.0 531 35.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 2.7e-60 237.3 494 35.4
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 4.7e-60 236.5 494 35.8
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 6.1e-60 236.1 560 35.0
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.4e-59 235.0 562 34.2
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 3.9e-59 233.4 537 34.1
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 1.5e-58 231.5 558 33.9
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 2.2e-57 227.6 524 33.8
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 4.8e-57 226.5 487 35.1
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 8.2e-57 225.7 481 35.6
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.5e-55 221.5 510 33.7
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 4.5e-55 219.9 528 35.2
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 1.7e-54 218.0 501 35.3
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 5.0e-54 216.5 551 32.7
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.2e-53 213.4 526 35.9
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 4.2e-53 213.4 526 35.9
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 4.2e-53 213.4 427 41.0
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 2.7e-52 210.7 521 33.6
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.8e-51 208.0 537 34.3
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 8.8e-51 205.7 486 35.2
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 8.8e-51 205.7 497 35.2
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.5e-50 204.9 534 33.0
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.3e-50 203.8 534 33.0
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 3.3e-50 203.8 508 33.7
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 7.4e-50 202.6 486 34.2
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 7.4e-50 202.6 533 32.8
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.8e-49 200.7 548 33.2
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 6.3e-49 199.5 478 33.1
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.4e-48 198.4 555 32.1
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.4e-48 198.4 487 34.3
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.4e-48 197.6 552 33.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.2e-47 195.3 500 32.8
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.6e-47 194.9 505 32.9
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.6e-47 194.9 496 33.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 5.9e-47 193.0 534 32.4
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 2.2e-46 191.0 502 32.1
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.0e-46 189.9 517 31.3
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 1.5e-45 188.3 495 33.7
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 7.2e-45 186.0 483 34.0
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.4e-43 181.8 219 50.2
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.8e-43 181.4 485 33.2
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.8e-43 181.4 485 33.2
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.8e-43 181.4 485 33.2
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 5.2e-43 179.9 489 33.5
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 2.8e-41 174.1 483 31.9
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 8.2e-41 172.6 410 34.1
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.8e-33 147.5 501 30.3
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 3.5e-31 140.6 429 35.9
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 8.0e-28 129.4 195 41.0
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 4.0e-27 127.1 589 25.6
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.6e-26 124.4 516 27.7
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 1.4e-24 118.6 227 37.0
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.6e-20 105.1 130 44.6
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.4e-19 102.1 379 28.2
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 4.0e-19 100.5 194 39.7
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 9.2e-16 89.4 225 30.7
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 8.0e-12 76.3 133 39.8
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.1e-08 65.9 81 46.9
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.4e-08 65.5 159 32.7


User provided reference genes

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