Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 1.8e-34 148.7 74 100.0
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 3.6e-27 124.4 68 92.6
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 3.1e-26 121.3 69 89.9
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.5e-25 119.0 69 88.4
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.1e-18 96.3 68 75.0
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 3.8e-16 87.8 68 66.2
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 7.9e-14 80.1 70 58.6
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.0e-13 79.7 69 58.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 1.3e-13 79.3 70 58.6
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.8e-13 79.0 68 55.9
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 2.3e-13 78.6 70 55.7
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 8.7e-13 76.6 70 58.6
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 7.4e-12 73.6 67 50.7
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 9.6e-12 73.2 63 57.1
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 3.7e-11 71.2 71 52.1
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 4.8e-11 70.9 67 53.7
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.4e-10 69.3 68 50.0
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 1.4e-10 69.3 70 45.7
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 3.1e-10 68.2 64 56.2
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 5.3e-10 67.4 44 68.2
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 9.0e-10 66.6 67 50.7
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 9.0e-10 66.6 67 50.7
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.2e-09 66.2 64 56.2
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 1.5e-09 65.9 67 50.7
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 1.5e-09 65.9 37 73.0
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 2.6e-09 65.1 62 54.8
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.6e-09 65.1 43 65.1
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 3.4e-09 64.7 71 50.7
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 3.4e-09 64.7 67 49.3
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 3.4e-09 64.7 65 55.4
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.8e-09 63.9 65 52.3
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.8e-09 63.9 65 52.3
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 5.8e-09 63.9 45 62.2
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 7.6e-09 63.5 70 50.0
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.3e-08 62.8 34 79.4
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.3e-08 62.8 65 52.3
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-08 62.8 65 52.3
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.3e-08 62.8 45 66.7
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 1.3e-08 62.8 57 56.1
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.7e-08 62.4 34 76.5
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.7e-08 62.4 34 76.5
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.9e-08 61.6 65 50.8
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 2.9e-08 61.6 33 78.8
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 3.8e-08 61.2 66 48.5
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 3.8e-08 61.2 74 40.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 4.9e-08 60.8 70 44.3
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.9e-08 60.8 65 50.8
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 4.9e-08 60.8 66 47.0
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 6.5e-08 60.5 67 49.3
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 6.5e-08 60.5 68 47.1
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 6.5e-08 60.5 33 75.8
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 8.4e-08 60.1 37 67.6
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 8.4e-08 60.1 51 58.8
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 8.4e-08 60.1 72 44.4
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 8.4e-08 60.1 33 78.8
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.1e-07 59.7 59 54.2
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 1.4e-07 59.3 61 54.1
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.9e-07 58.9 53 56.6
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.9e-07 58.9 68 48.5
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 1.9e-07 58.9 50 58.0
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.9e-07 58.9 33 75.8
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 2.5e-07 58.5 65 52.3
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 3.2e-07 58.2 50 58.0
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.2e-07 57.8 65 47.7
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 4.2e-07 57.8 58 58.6
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 4.2e-07 57.8 71 46.5
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 7.1e-07 57.0 44 59.1
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 7.1e-07 57.0 76 43.4
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 7.1e-07 57.0 54 51.9
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 9.3e-07 56.6 59 54.2
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 9.3e-07 56.6 30 76.7
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 9.3e-07 56.6 30 76.7
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 1.2e-06 56.2 44 59.1
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 1.2e-06 56.2 44 59.1
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 4.6e-06 54.3 67 40.3
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 4.6e-06 54.3 52 50.0
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 7.9e-06 53.5 34 61.8


User provided reference genes

Program Settings