Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 7.3e-24 113.2 64 100.0
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 8.0e-23 109.8 64 96.9
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 2.3e-22 108.2 64 95.3
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 8.3e-20 99.8 64 85.9
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 3.2e-19 97.8 59 94.9
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 7.0e-19 96.7 64 85.9
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.2e-18 95.9 65 89.2
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 1.2e-18 95.9 64 84.4
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 1.6e-18 95.5 64 84.4
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 2.7e-18 94.7 63 84.1
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 3.5e-18 94.4 62 85.5
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 4.6e-18 94.0 64 84.4
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.3e-17 91.7 64 82.8
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 3.0e-17 91.3 64 82.8
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 3.0e-17 91.3 65 84.6
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 3.9e-17 90.9 65 84.6
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.1e-16 89.4 65 83.1
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 81.5
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 81.5
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.5e-16 89.0 64 78.1
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 83.1
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 81.5
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 83.1
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 83.1
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 83.1
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.5e-16 89.0 65 83.1
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 1.9e-16 88.6 65 81.5
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 2.5e-16 88.2 65 81.5
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 80.0
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 3.3e-16 87.8 65 81.5
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 4.3e-16 87.4 60 85.0
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 4.3e-16 87.4 65 80.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 5.6e-16 87.0 65 80.0
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 5.6e-16 87.0 65 80.0
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.6e-16 87.0 65 80.0
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 5.6e-16 87.0 65 80.0
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 5.6e-16 87.0 65 80.0
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 7.3e-16 86.7 65 80.0
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 7.3e-16 86.7 65 80.0
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 9.5e-16 86.3 65 78.5
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 9.5e-16 86.3 65 80.0
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 9.5e-16 86.3 65 80.0
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 9.5e-16 86.3 65 81.5
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 1.2e-15 85.9 65 80.0
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 78.5
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 78.5
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 81.5
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 80.0
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 76.9
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 78.5
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.6e-15 85.5 65 78.5
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 2.1e-15 85.1 65 78.5
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.1e-15 85.1 65 80.0
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 2.8e-15 84.7 65 76.9
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 3.6e-15 84.3 63 79.4
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 3.6e-15 84.3 65 80.0
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 4.7e-15 84.0 65 76.9
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 4.7e-15 84.0 65 76.9
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 4.7e-15 84.0 65 76.9
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 4.7e-15 84.0 62 82.3
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 4.7e-15 84.0 65 78.5
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 6.2e-15 83.6 65 76.9
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 6.2e-15 83.6 65 76.9
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 6.2e-15 83.6 65 76.9
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 6.2e-15 83.6 65 78.5
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 6.2e-15 83.6 65 76.9
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 8.0e-15 83.2 66 80.3
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 8.0e-15 83.2 64 78.1
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 8.0e-15 83.2 65 76.9
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 8.0e-15 83.2 64 76.6
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.4e-14 82.4 65 81.5
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.8e-14 82.0 71 74.6
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.8e-14 82.0 65 75.4
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 2.3e-14 81.6 62 79.0
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 3.1e-14 81.3 62 79.0
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 3.1e-14 81.3 62 79.0
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 3.1e-14 81.3 62 79.0
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 3.1e-14 81.3 62 79.0
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 3.1e-14 81.3 62 79.0
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 3.1e-14 81.3 54 83.3
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 3.1e-14 81.3 59 81.4
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 4.0e-14 80.9 75 70.7
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 4.0e-14 80.9 66 78.8
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 4.0e-14 80.9 65 75.4
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 5.2e-14 80.5 65 73.8
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 5.2e-14 80.5 61 78.7
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 5.2e-14 80.5 64 76.6
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 6.8e-14 80.1 60 78.3
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 6.8e-14 80.1 60 78.3
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 8.9e-14 79.7 74 70.3
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 2.0e-13 78.6 58 79.3
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 2.6e-13 78.2 65 72.3
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 4.4e-13 77.4 62 71.0
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 7.5e-13 76.6 63 73.0
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 7.5e-13 76.6 64 73.4
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 9.8e-13 76.3 65 75.4
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 9.8e-13 76.3 65 75.4
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 2.9e-12 74.7 74 66.2
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 2.9e-12 74.7 59 74.6
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 3.7e-12 74.3 62 72.6
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 4.9e-12 73.9 93 57.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 6.4e-12 73.6 61 73.8
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 6.4e-12 73.6 65 72.3
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.1e-11 72.8 90 57.8
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.4e-11 70.5 54 79.6
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 5.4e-11 70.5 53 73.6
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 7.0e-11 70.1 54 79.6
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 9.2e-11 69.7 60 71.7
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 2.7e-10 68.2 60 73.3
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 7.8e-10 66.6 60 70.0
CAN.G710.59 Capsicum annuum HOM05D006417 ORTHO05D115303 3.0e-09 64.7 43 83.7
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.7e-07 57.4 65 63.1


User provided reference genes

Program Settings