Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 0.0e+00 1154.0 582 100.0
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 0.0e+00 1130.5 588 97.4
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 6.3e-276 953.7 581 83.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.0e-273 946.4 586 82.8
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.3e-273 945.3 590 81.9
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.6e-205 719.2 560 66.4
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 8.7e-201 704.1 558 65.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.3e-200 701.8 569 62.9
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.3e-199 700.3 564 64.4
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-199 699.9 553 64.6
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.9e-195 686.4 569 62.4
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 5.5e-195 684.9 557 63.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.6e-194 681.8 569 60.6
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 7.9e-194 681.0 562 63.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.3e-193 679.5 557 61.8
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 2.3e-193 679.5 559 62.8
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.7e-193 677.9 594 60.3
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.6e-192 676.0 562 63.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-190 670.6 553 60.4
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.2e-189 667.2 573 60.0
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 1.7e-188 663.3 572 59.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 6.5e-188 661.4 579 59.8
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 8.5e-188 661.0 559 61.5
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.1e-187 660.6 550 60.4
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 3.2e-187 659.1 572 60.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.2e-186 657.1 580 59.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.1e-186 656.4 572 59.1
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.7e-186 656.0 570 59.6
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 6.1e-186 654.8 576 59.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.0e-185 654.1 562 61.0
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.9e-185 652.1 567 61.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 6.7e-185 651.4 578 58.7
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-184 650.6 568 58.8
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 1.1e-184 650.6 604 57.1
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.0e-184 649.8 571 59.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.6e-184 649.4 582 59.8
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 2.2e-183 646.4 559 59.6
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-183 645.6 567 58.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.3e-183 644.8 581 57.7
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.8e-182 643.3 572 60.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.1e-182 642.5 554 59.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.6e-181 640.2 638 55.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.5e-181 639.0 575 58.6
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.5e-181 638.6 573 59.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.9e-181 638.3 568 58.8
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.7e-180 636.7 534 61.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.2e-180 636.3 557 58.5
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.9e-179 633.3 564 59.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.2e-179 632.5 557 58.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.2e-179 632.1 557 58.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.0e-177 627.5 571 58.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.3e-177 626.3 559 58.7
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.0e-177 625.5 567 59.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 2.0e-176 623.2 569 58.2
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 3.3e-176 622.5 514 62.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 9.7e-176 620.9 557 57.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.7e-175 619.0 574 56.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 3.7e-175 619.0 539 58.3
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.1e-174 617.5 576 57.1
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.0e-172 610.9 525 60.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.2e-172 609.8 601 55.7
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 4.2e-171 605.5 591 55.3
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.2e-171 604.7 492 65.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.6e-170 602.4 584 56.0
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.7e-170 602.1 568 55.8
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.1e-170 601.7 568 55.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.3e-169 599.7 560 55.4
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.2e-168 597.4 588 55.1
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 7.5e-168 594.7 447 65.8
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 6.3e-167 591.7 587 55.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.4e-166 588.6 576 54.5
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.7e-165 586.3 600 53.0
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.7e-164 583.6 572 54.9
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 8.5e-164 581.3 577 52.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 1.1e-163 580.9 508 59.1
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.5e-163 580.5 584 53.9
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.9e-163 580.1 577 55.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.2e-163 579.3 586 52.6
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-161 573.9 566 55.1
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.8e-161 571.6 554 53.6
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.0e-160 570.1 580 54.3
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.4e-160 569.3 564 53.9
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 4.4e-160 568.9 642 51.6
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.8e-158 563.5 649 49.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.7e-157 559.7 597 52.4
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.7e-156 557.0 478 59.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-156 556.6 559 53.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.6e-156 554.7 558 54.1
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 5.6e-155 552.0 369 70.5
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.2e-154 550.8 578 52.9
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.2e-154 550.8 600 49.7
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 3.6e-154 549.3 562 52.1
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 3.6e-154 549.3 578 52.2
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 8.0e-154 548.1 580 52.1
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.8e-153 547.0 578 52.1
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-153 547.0 557 52.1
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.0e-153 545.8 557 50.8
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 7.5e-152 541.6 558 52.2
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.7e-151 540.4 555 52.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 8.3e-151 538.1 558 52.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.2e-149 534.3 582 52.7
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.9e-148 529.3 370 67.0
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.3e-147 525.0 453 62.3
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.7e-146 522.3 561 52.2
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.4e-144 516.2 414 59.7
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.9e-143 513.1 557 49.9
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.7e-143 512.7 471 54.4
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 5.4e-142 508.8 557 49.4
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 6.6e-140 501.9 571 51.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 5.6e-139 498.8 558 48.2
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 4.7e-138 495.7 566 49.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 8.1e-138 495.0 571 49.4
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.2e-136 491.1 360 62.8
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 1.3e-135 487.6 571 50.3
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 6.4e-135 485.3 299 73.9
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.0e-132 478.0 591 47.5
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.5e-131 474.2 552 46.7
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.3e-131 472.6 347 64.0
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.8e-130 469.9 563 47.4
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.7e-125 453.4 474 51.7
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 7.3e-123 445.3 338 63.0
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.5e-115 420.2 450 50.2
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 5.6e-115 419.1 349 56.2
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.3e-115 418.7 389 57.1
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.1e-114 415.2 364 52.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.4e-113 414.5 364 51.9
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.2e-112 411.4 530 44.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 2.9e-111 406.8 355 52.7
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 5.4e-110 402.5 321 62.9
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.7e-109 400.2 583 40.1
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.5e-109 399.8 347 53.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 1.0e-108 398.3 579 39.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-108 398.3 583 40.0
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.0e-108 396.7 592 38.9
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.9e-108 396.4 580 39.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.1e-107 394.8 615 37.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.3e-107 393.3 581 39.4
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.3e-107 393.3 581 39.4
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.3e-106 391.3 280 60.7
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 2.1e-106 390.6 311 59.8
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 4.5e-104 382.9 299 56.2
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 4.9e-103 379.4 581 37.5
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 4.9e-103 379.4 579 37.5
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 4.9e-103 379.4 579 37.5
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 4.9e-103 379.4 581 37.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 9.3e-102 375.2 351 50.1
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.0e-100 371.7 228 73.7
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 5.1e-100 369.4 387 48.6
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 2.2e-95 354.0 396 51.5
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.1e-89 333.2 208 74.5
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.2e-88 331.6 358 54.5
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-87 327.8 208 73.1
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 4.8e-82 309.7 298 49.7
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 3.4e-80 303.5 566 38.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 8.8e-76 288.9 330 50.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.1e-65 253.8 583 35.3
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.0e-60 238.8 274 52.9
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.6e-56 224.9 580 33.1
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.4e-49 201.1 166 57.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.5e-48 196.8 331 40.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.8e-44 184.9 125 66.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.7e-42 178.3 104 76.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 3.1e-41 174.1 197 48.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.0e-40 171.4 285 35.4
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.4e-35 153.7 83 86.7
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.1e-30 139.0 83 73.5
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.4e-26 123.2 69 84.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.3e-26 122.9 65 89.2
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.7e-24 117.9 100 53.0
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 8.6e-23 112.8 94 56.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 3.4e-19 100.9 285 31.9
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.1e-14 85.9 272 31.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.9e-11 72.8 268 27.2
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.3e-07 62.4 202 27.7


User provided reference genes

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