Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042120.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 2.6e-121 438.7 219 100.0
Nitab4.5_0002119g0070 Nicotiana tabacum HOM05D003063 ORTHO05D003242 2.8e-35 152.9 182 50.5
Solyc02g092350.3 Solanum lycopersicum HOM05D003063 ORTHO05D003242 3.7e-35 152.5 141 58.9
Sopen02g036900 Solanum pennellii HOM05D003063 ORTHO05D003242 3.7e-35 152.5 141 58.9
PGSC0003DMG400021416 Solanum tuberosum HOM05D003063 ORTHO05D003242 8.2e-35 151.4 141 58.9
Nitab4.5_0000142g0080 Nicotiana tabacum HOM05D003063 ORTHO05D003242 4.2e-31 139.0 143 53.1
CAN.G1075.39 Capsicum annuum HOM05D003063 ORTHO05D003242 2.0e-28 130.2 143 51.0
Sopen12g021200 Solanum pennellii HOM05D003063 ORTHO05D003242 2.4e-26 123.2 68 88.2
Duzib147G1538 Durio zibethinus HOM05D003063 ORTHO05D003242 2.2e-19 100.1 143 39.2
Oeu011986.1 Olea europaea HOM05D003063 ORTHO05D003242 9.1e-18 94.7 140 37.9
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 1.6e-17 94.0 144 38.2
Prupe.6G220300 Prunus persica HOM05D003063 ORTHO05D003242 5.9e-17 92.0 142 38.7
Rhsim08G0093400 Rhododendron simsii HOM05D003063 ORTHO05D003242 1.3e-16 90.9 149 36.9
Atru.chr3.1013 Acer truncatum HOM05D003063 ORTHO05D003242 1.5e-15 87.4 157 36.9
CiPaw.01G004400 Carya illinoinensis HOM05D003063 ORTHO05D003242 1.6e-14 84.0 143 35.0
Cc07_g07110 Coffea canephora HOM05D003063 ORTHO05D003242 1.6e-14 84.0 142 36.6
Dinv26934 Davidia involucrata HOM05D003063 ORTHO05D003242 1.6e-14 84.0 143 38.5
Actinidia16426 Actinidia chinensis HOM05D002283 ORTHO05D008228 2.8e-14 83.2 140 37.1
Psat2g171600 Pisum sativum HOM05D003063 ORTHO05D003242 2.8e-14 83.2 144 34.7
Cpa.g.sc6.14 Carica papaya HOM05D003063 ORTHO05D003242 6.1e-14 82.0 144 35.4
Migut.H00346 Erythranthe guttata HOM05D003063 ORTHO05D003242 1.0e-13 81.3 139 33.8
Lj2g0021519 Lotus japonicus HOM05D003063 ORTHO05D003242 1.4e-13 80.9 147 34.0
TWI73G0373 Tripterygium wilfordii HOM05D003063 ORTHO05D003242 1.4e-13 80.9 143 35.0
Sopen03g014490 Solanum pennellii HOM05D003063 ORTHO05D003242 1.8e-13 80.5 48 81.2
Eucgr.H02308 Eucalyptus grandis HOM05D003063 ORTHO05D003242 5.2e-13 79.0 142 33.1
MD02G1186300 Malus domestica HOM05D003063 ORTHO05D003242 5.2e-13 79.0 142 35.2
TPR.G9937 Trifolium pratense HOM05D003063 ORTHO05D003242 6.8e-13 78.6 144 32.6
Sc07g0000540 Simmondsia chinensis HOM05D003063 ORTHO05D003242 2.6e-12 76.6 145 32.4
Lsat_1_v5_gn_4_161620 Lactuca sativa HOM05D003063 ORTHO05D003242 4.4e-12 75.9 142 32.4
GSVIVG01002076001 Vitis vinifera HOM05D003063 ORTHO05D003242 5.7e-12 75.5 142 34.5
Medtr5g015390 Medicago truncatula HOM05D003063 ORTHO05D003242 9.8e-12 74.7 146 32.9
Aqoxy6G02607 Aquilegia oxysepala HOM05D003063 ORTHO05D003242 1.3e-11 74.3 166 30.7
Gohir.D11G208600 Gossypium hirsutum HOM05D003063 ORTHO05D003242 1.7e-11 73.9 142 33.8
Lalb_Chr09g0323611 Lupinus albus HOM05D003063 ORTHO05D003242 2.2e-11 73.6 142 32.4
THA.LOC104827634 Tarenaya hassleriana HOM05D003063 ORTHO05D003242 2.2e-11 73.6 170 32.9
Gohir.A11G214800 Gossypium hirsutum HOM05D003063 ORTHO05D003242 3.7e-11 72.8 139 30.9
Gorai.007G223600 Gossypium raimondii HOM05D003063 ORTHO05D003242 3.7e-11 72.8 142 33.1
BcaC04g23234 Brassica carinata HOM05D003063 ORTHO05D003242 4.9e-11 72.4 82 43.9
Thecc.01G072900 Theobroma cacao HOM05D003063 ORTHO05D003242 4.9e-11 72.4 172 31.4
VMungo1215G2377 Vigna mungo HOM05D003063 ORTHO05D003242 6.3e-11 72.0 142 31.0
Glyma.11G047500 Glycine max HOM05D003063 ORTHO05D003242 8.3e-11 71.6 142 32.4
C09p10860 Brassica napus HOM05D003063 ORTHO05D003242 1.1e-10 71.2 82 42.7
FAN19G2514 Fragaria x ananassa HOM05D003063 ORTHO05D003242 1.1e-10 71.2 148 30.4
FvH4_1g17750 Fragaria vesca HOM05D003063 ORTHO05D003242 1.4e-10 70.9 148 30.4
Phvul.002G010500 Phaseolus vulgaris HOM05D003063 ORTHO05D003242 1.8e-10 70.5 164 29.9
TAR381G1137 Trochodendron aralioides HOM05D003063 ORTHO05D003242 1.8e-10 70.5 139 32.4
CSS0003630 Camellia sinensis var. sinensis HOM05D003063 ORTHO05D003242 4.1e-10 69.3 124 34.7
BcaB04g20046 Brassica carinata HOM05D003063 ORTHO05D003242 5.4e-10 68.9 82 42.7
A02p44150 Brassica napus HOM05D003063 ORTHO05D003242 5.4e-10 68.9 82 43.9
BraA02t09338Z Brassica rapa HOM05D003063 ORTHO05D003242 5.4e-10 68.9 82 43.9
Ciclev10027120m.g Citrus clementina HOM05D003063 ORTHO05D003242 5.4e-10 68.9 73 45.2
Manes.12G114901 Manihot esculenta HOM05D003063 ORTHO05D003242 5.4e-10 68.9 142 32.4
PGR102G0884 Punica granatum HOM05D003063 ORTHO05D003242 5.4e-10 68.9 145 29.0
FAN23G1757 Fragaria x ananassa HOM05D003063 ORTHO05D003242 7.0e-10 68.6 148 29.7
QL06p039562 Quercus lobata HOM05D003063 ORTHO05D003242 7.0e-10 68.6 140 31.4
C02p64410 Brassica napus HOM05D003063 ORTHO05D003242 1.2e-09 67.8 82 42.7
BolC2t12505H Brassica oleracea HOM05D003063 ORTHO05D003242 2.0e-09 67.0 82 42.7
HanXRQChr12g0373031 Helianthus annuus HOM05D003063 ORTHO05D003242 4.5e-09 65.9 158 29.1
arahy.Tifrunner.gnm1.ann1.L590LZ Arachis hypogaea HOM05D003063 ORTHO05D003242 7.8e-09 65.1 154 32.5
CARHR280040 Cardamine hirsuta HOM05D003063 ORTHO05D003242 7.8e-09 65.1 82 40.2
Sp2g29100 Schrenkiella parvula HOM05D003063 ORTHO05D003242 7.8e-09 65.1 68 51.5
Ah.02g125400 Amaranthus hybridus HOM05D003063 ORTHO05D003242 1.0e-08 64.7 138 31.2
COL.COLO4_11579 Corchorus olitorius HOM05D003063 ORTHO05D003242 1.0e-08 64.7 143 31.5
vmacro18025 Vaccinium macrocarpon HOM05D003063 ORTHO05D003242 1.0e-08 64.7 164 30.5
ECA232G0232 Erigeron canadensis HOM05D003063 ORTHO05D003242 1.3e-08 64.3 157 29.9
PSO675G8643 Papaver somniferum HOM05D003063 ORTHO05D003242 1.3e-08 64.3 174 29.3
GSVIVG01000104001 Vitis vinifera HOM05D003063 ORTHO05D003242 1.3e-08 64.3 70 47.1
AL8G43750 Arabidopsis lyrata HOM05D003063 ORTHO05D003242 1.7e-08 63.9 145 31.7
BcaC03g18366 Brassica carinata HOM05D003063 ORTHO05D003242 2.3e-08 63.5 74 44.6
Peaxi162Scf00548g00615 Petunia axillaris HOM05D003063 ORTHO05D003242 1.1e-07 61.2 44 61.4
arahy.Tifrunner.gnm1.ann1.7H1L6U Arachis hypogaea HOM05D003063 ORTHO05D003242 1.5e-07 60.8 145 32.4
AT5G67550 Arabidopsis thaliana HOM05D003063 ORTHO05D003242 2.5e-07 60.1 145 31.7
A09p09280 Brassica napus HOM05D003063 ORTHO05D003242 2.5e-07 60.1 82 37.8
BraA09t36581Z Brassica rapa HOM05D003063 ORTHO05D003242 2.5e-07 60.1 82 37.8
Carub.0008s2692 Capsella rubella HOM05D003063 ORTHO05D003242 2.5e-07 60.1 82 37.8
Haze_15281 Corylus avellana HOM05D003063 ORTHO05D003242 2.5e-07 60.1 114 34.2
PSO541G1933 Papaver somniferum HOM05D003063 ORTHO05D003242 2.5e-07 60.1 153 27.5
Lj7A98G7 Lonicera japonica HOM05D003063 ORTHO05D003242 5.6e-07 58.9 128 29.7
RcHm_v2.0_Chr2g0108061 Rosa chinensis HOM05D003063 ORTHO05D003242 7.3e-07 58.5 123 30.9
EL10Ac6g15616 Beta vulgaris HOM05D003063 ORTHO05D003242 1.2e-06 57.8 89 37.1
Thhalv10005509m.g Eutrema salsugineum HOM05D003063 ORTHO05D003242 1.2e-06 57.8 82 37.8
Potri.017G023400 Populus trichocarpa HOM05D003063 ORTHO05D003242 1.6e-06 57.4 140 27.1
Hund13953 Selenicereus undatus HOM05D003063 ORTHO05D003242 4.7e-06 55.8 126 32.5
AUR62040236 Chenopodium quinoa HOM05D003063 ORTHO05D003242 8.0e-06 55.1 187 27.3


User provided reference genes

Program Settings