Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 2.9e-56 221.9 128 100.0
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 2.1e-46 189.1 128 79.7
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 3.8e-40 168.3 106 97.2
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.0e-24 117.1 124 55.6
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 2.0e-20 102.8 138 47.1
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 1.1e-18 97.1 152 42.1
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.4e-18 96.7 136 43.4
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 2.4e-18 95.9 141 41.1
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 3.1e-18 95.5 130 47.7
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 4.1e-18 95.1 139 42.4
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 3.5e-17 92.0 141 44.0
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 3.5e-17 92.0 141 44.0
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 4.5e-17 91.7 135 43.7
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 5.9e-17 91.3 146 43.2
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.7e-16 89.7 135 43.7
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.9e-16 89.0 156 41.7
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 3.8e-16 88.6 143 41.3
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 5.0e-16 88.2 134 40.3
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.1e-15 87.0 137 40.9
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.2e-15 85.5 160 37.5
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 3.2e-15 85.5 157 38.9
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 4.2e-15 85.1 138 39.1
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 5.5e-15 84.7 152 36.8
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 7.2e-15 84.3 148 37.2
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.2e-15 84.3 156 37.8
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 9.4e-15 84.0 138 41.3
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-14 83.2 145 39.3
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 1.6e-14 83.2 79 59.5
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 2.1e-14 82.8 153 37.9
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.1e-14 82.8 143 37.8
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.7e-14 82.4 136 38.2
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.7e-14 82.4 156 37.2
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.7e-14 82.4 118 40.7
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.6e-14 82.0 143 39.9
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 3.6e-14 82.0 135 40.0
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.7e-14 81.6 158 39.2
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 4.7e-14 81.6 149 38.3
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 6.1e-14 81.3 158 39.2
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.0e-14 80.9 150 38.7
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 8.0e-14 80.9 83 57.8
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.0e-13 80.5 139 39.6
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 1.0e-13 80.5 138 40.6
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.0e-13 80.5 151 37.1
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.4e-13 80.1 149 34.9
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.8e-13 79.7 160 36.9
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.8e-13 79.7 120 40.8
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.8e-13 79.7 166 37.3
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 1.8e-13 79.7 168 35.7
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.3e-13 79.3 156 45.5
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.3e-13 79.3 150 38.0
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 2.3e-13 79.3 159 36.5
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 2.3e-13 79.3 140 40.7
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.0e-13 79.0 143 37.1
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.0e-13 78.6 153 37.3
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.0e-13 78.6 166 36.7
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.2e-13 78.2 153 37.3
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 5.2e-13 78.2 134 35.8
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.8e-13 77.8 136 37.5
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.8e-13 77.8 150 37.3
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 6.8e-13 77.8 152 36.2
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 8.8e-13 77.4 148 37.8
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 8.8e-13 77.4 143 38.5
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.8e-13 77.4 166 36.7
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 8.8e-13 77.4 146 36.3
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.2e-12 77.0 153 36.6
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.5e-12 76.6 159 36.5
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.0e-12 76.3 162 36.4
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 3.4e-12 75.5 157 43.3
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 3.4e-12 75.5 144 34.7
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.4e-12 75.5 138 38.4
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 3.4e-12 75.5 119 41.2
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 4.4e-12 75.1 164 34.8
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 4.4e-12 75.1 109 42.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 5.7e-12 74.7 159 36.5
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 5.7e-12 74.7 152 37.5
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 5.7e-12 74.7 165 36.4
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 5.7e-12 74.7 148 35.8
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 7.5e-12 74.3 121 40.5
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 7.5e-12 74.3 89 44.9
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 9.8e-12 73.9 146 42.5
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 9.8e-12 73.9 142 40.1
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 1.3e-11 73.6 117 37.6
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.3e-11 73.6 119 38.7
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.7e-11 73.2 146 37.7
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.8e-11 72.4 128 37.5
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.8e-11 72.4 134 39.6
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 3.7e-11 72.0 149 34.2
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 4.8e-11 71.6 141 38.3
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.3e-11 71.2 141 34.8
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 6.3e-11 71.2 160 33.1
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 8.3e-11 70.9 132 37.9
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-10 70.5 156 32.7
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.8e-10 69.7 150 34.7
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 2.4e-10 69.3 152 41.4
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.4e-10 69.3 154 32.5
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 2.4e-10 69.3 150 33.3
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 3.1e-10 68.9 119 37.0
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 3.1e-10 68.9 152 33.6
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 4.1e-10 68.6 170 30.0
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 5.4e-10 68.2 118 38.1
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 5.4e-10 68.2 137 36.5
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.0e-10 67.8 104 42.3
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 7.0e-10 67.8 156 34.0
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 1.2e-09 67.0 144 36.1
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.6e-09 66.6 125 39.2
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 1.6e-09 66.6 103 39.8
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.7e-09 65.9 138 44.9
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.7e-09 65.9 134 35.1
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 3.5e-09 65.5 116 37.9
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 3.5e-09 65.5 122 36.9
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 7.7e-09 64.3 125 38.4
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 1.3e-08 63.5 134 35.8
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.3e-08 63.5 96 41.7
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 1.7e-08 63.2 171 28.7
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 2.2e-08 62.8 144 31.9
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.2e-08 62.8 141 35.5
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 2.9e-08 62.4 138 37.0
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.5e-08 61.2 100 38.0
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 1.1e-07 60.5 132 33.3
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 1.1e-07 60.5 132 33.3
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 1.5e-07 60.1 129 32.6
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.9e-07 59.7 137 35.0
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 2.5e-07 59.3 156 28.8
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 4.2e-07 58.5 148 32.4
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 5.5e-07 58.2 139 35.3
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 2.7e-06 55.8 141 33.3
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 2.7e-06 55.8 137 33.6
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.7e-06 55.1 88 42.0


User provided reference genes

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