Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.5e-167 592.0 296 100.0
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.1e-164 583.2 297 99.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 6.5e-160 567.4 300 96.3
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.7e-136 489.6 297 83.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 2.8e-126 455.7 272 84.2
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.0e-104 382.5 294 67.3
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 2.1e-102 376.3 278 68.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 5.2e-101 371.7 304 66.1
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.2e-100 370.5 293 65.2
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.4e-100 368.6 293 65.9
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.3e-99 367.1 279 69.2
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.4e-98 363.6 299 62.9
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.1e-97 359.8 296 65.2
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.7e-97 359.4 299 63.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 6.0e-97 358.2 298 64.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.0e-97 358.2 292 64.0
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.3e-96 356.3 299 62.9
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.1e-95 354.0 296 63.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 2.5e-95 352.8 288 64.2
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 3.3e-95 352.4 292 63.4
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.6e-95 351.7 291 65.3
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 9.6e-95 350.9 288 63.5
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.6e-94 350.1 288 63.5
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 2.8e-94 349.4 288 61.5
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.6e-94 349.0 288 62.8
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 4.7e-94 348.6 293 63.1
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 4.7e-94 348.6 296 64.5
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.1e-93 347.4 293 61.4
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.4e-93 347.1 289 60.9
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.8e-93 346.7 285 63.2
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.0e-93 345.5 312 64.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 4.0e-93 345.5 290 62.1
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.5e-92 343.6 288 61.8
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.6e-92 342.8 278 64.4
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 3.4e-92 342.4 297 59.9
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 3.4e-92 342.4 288 61.8
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 5.8e-92 341.7 314 62.1
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.3e-91 340.5 288 61.5
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.7e-91 340.1 284 61.6
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 3.8e-91 339.0 288 61.5
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 6.4e-91 338.2 288 61.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 8.4e-91 337.8 297 60.9
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.1e-90 337.4 291 60.8
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 1.4e-90 337.0 288 60.4
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 7.1e-90 334.7 306 58.2
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-89 334.0 293 61.1
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.6e-89 333.6 288 60.4
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 2.7e-89 332.8 318 57.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.6e-89 332.0 287 59.6
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 6.0e-89 331.6 282 60.3
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 7.8e-89 331.3 288 60.1
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.1e-88 328.6 287 61.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 6.6e-88 328.2 297 58.2
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.1e-86 323.2 295 60.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 4.8e-86 322.0 295 60.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.4e-85 320.5 289 58.8
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 1.4e-85 320.5 274 62.8
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.8e-85 320.1 292 58.2
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 3.1e-85 319.3 287 58.2
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 9.0e-85 317.8 289 57.8
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 4.5e-84 315.5 287 58.2
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 1.3e-83 313.9 297 56.6
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.3e-83 313.9 284 58.8
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.7e-83 313.5 281 59.1
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.8e-83 312.4 289 58.1
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 4.9e-83 312.0 293 56.7
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 6.4e-83 311.6 310 54.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 6.4e-83 311.6 286 59.1
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.2e-82 309.3 286 60.1
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 7.1e-82 308.1 303 55.4
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 3.5e-81 305.8 294 55.8
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 3.0e-80 302.8 291 55.0
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 3.0e-80 302.8 274 59.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 5.1e-80 302.0 298 55.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 8.7e-80 301.2 290 55.9
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 4.3e-79 298.9 269 59.1
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 1.3e-78 297.4 291 54.0
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 1.6e-78 297.0 293 53.6
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.2e-78 295.0 218 67.0
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 6.2e-78 295.0 275 56.7
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 8.1e-78 294.7 278 57.2
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-77 293.1 294 55.4
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.4e-76 289.3 190 79.5
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 4.5e-76 288.9 294 53.7
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.5e-71 273.9 290 54.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.9e-69 265.0 343 45.2
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.5e-65 252.7 280 49.3
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 2.3e-64 250.0 248 54.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 5.1e-64 248.8 309 48.9
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 5.7e-63 245.4 173 70.5
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 5.7e-63 245.4 297 48.5
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-61 240.7 174 67.2
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.8e-61 240.4 174 70.1
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-61 240.0 292 48.3
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.9e-59 233.0 291 46.4
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-58 230.7 297 44.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.2e-58 229.6 277 46.9
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.6e-57 225.7 166 66.3
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 5.1e-56 222.2 298 48.3
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 5.7e-55 218.8 279 49.5
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 6.3e-54 215.3 149 73.8
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.2e-54 214.9 279 49.1
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.2e-50 201.8 119 79.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.2e-50 201.8 119 79.8
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.6e-49 200.7 283 43.8
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 6.1e-49 198.7 303 45.2
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 7.9e-49 198.4 321 43.3
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.8e-46 189.1 274 43.8
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.0e-44 183.7 288 39.6
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.4e-44 183.0 105 82.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 4.5e-44 182.6 292 40.4
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 7.2e-42 175.3 218 50.0
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 1.6e-41 174.1 176 55.7
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 2.7e-41 173.3 294 36.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 7.9e-41 171.8 104 75.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.8e-40 170.6 323 36.2
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.5e-39 167.5 324 36.4
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.7e-38 162.9 323 35.6
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-37 161.4 209 45.0
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 4.1e-37 159.5 291 36.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.1e-37 158.3 116 62.9
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.5e-36 156.4 95 78.9
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 9.4e-34 148.3 229 40.2
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 3.1e-29 133.3 203 42.9
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.9e-28 129.0 142 51.4
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.9e-27 126.7 118 61.0
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.2e-26 122.9 152 44.1
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-25 120.6 102 57.8
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-25 119.8 152 43.4
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.0e-24 118.2 149 45.6
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.5e-20 102.8 55 85.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.0e-16 91.7 50 84.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 3.5e-12 76.6 43 79.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.8e-11 73.2 107 39.3
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.8e-08 64.3 71 47.9
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.2e-08 62.8 64 50.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.7e-07 59.3 107 36.4
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 1.7e-06 57.8 98 39.8
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 3.7e-06 56.6 62 50.0
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 4.9e-06 56.2 60 51.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 8.3e-06 55.5 50 60.0


User provided reference genes

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