Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.2e-91 339.0 174 100.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 4.5e-84 314.7 168 96.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 3.4e-68 261.9 160 83.1
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 2.5e-66 255.8 161 79.5
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.2e-66 255.0 138 95.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-59 233.0 161 71.4
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.0e-59 231.5 160 70.6
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.0e-59 231.5 148 81.1
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 4.2e-58 228.4 161 69.6
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 9.4e-58 227.3 161 68.9
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.6e-57 226.5 161 68.9
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 6.1e-57 224.6 161 68.3
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 5.7e-55 218.0 159 67.9
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.1e-53 210.7 156 64.1
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.2e-52 210.3 156 64.1
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-49 200.3 161 60.9
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.0e-49 197.6 161 60.2
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.4e-48 196.8 156 59.6
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.8e-48 196.4 161 59.6
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.3e-48 196.1 161 59.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.3e-47 192.2 155 60.0
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.7e-47 191.4 155 59.4
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.3e-45 184.9 162 59.3
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 5.3e-45 184.9 161 57.1
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.6e-44 183.3 163 58.3
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 3.5e-44 182.2 160 57.5
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 5.0e-43 178.3 165 55.2
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.5e-43 177.9 159 54.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.1e-42 177.2 160 55.0
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.5e-42 176.0 161 54.0
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.2e-42 175.6 161 54.0
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.2e-42 175.3 161 54.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 5.5e-42 174.9 172 52.9
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.6e-41 173.3 161 54.7
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.1e-41 172.9 161 55.3
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 8.0e-41 171.0 156 56.4
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-40 170.2 161 51.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-40 170.2 164 51.2
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.3e-40 169.5 156 48.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.3e-40 169.5 156 48.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.3e-40 169.5 161 52.2
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 5.2e-40 168.3 156 53.8
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.3e-39 165.6 161 52.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 4.4e-39 165.2 157 51.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.4e-39 165.2 163 51.5
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.2e-38 162.9 161 47.8
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 3.7e-38 162.2 157 52.2
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 6.3e-38 161.4 161 52.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 6.3e-38 161.4 158 53.2
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 8.2e-38 161.0 162 50.0
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.1e-37 160.6 161 50.3
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-37 160.2 164 47.6
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-37 160.2 157 47.8
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.4e-37 160.2 157 51.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.4e-37 160.2 157 51.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.4e-37 159.5 163 50.3
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.4e-37 159.5 161 49.1
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 3.1e-37 159.1 163 49.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 3.1e-37 159.1 156 50.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 7.0e-37 157.9 162 49.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 7.0e-37 157.9 158 53.8
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 9.1e-37 157.5 156 49.4
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.2e-36 157.1 135 62.2
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.2e-36 157.1 158 52.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.0e-36 156.4 156 48.7
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.5e-36 155.6 157 46.5
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.5e-36 155.6 156 48.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 4.5e-36 155.2 161 49.7
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 4.5e-36 155.2 139 59.7
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 7.7e-36 154.5 158 52.5
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.0e-35 154.1 161 49.7
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.0e-35 154.1 170 46.5
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.3e-35 153.7 157 49.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-35 153.3 161 50.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 2.2e-35 152.9 158 48.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.9e-35 152.5 156 49.4
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 3.8e-35 152.1 160 46.2
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.8e-35 152.1 161 49.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 5.0e-35 151.8 161 47.2
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.5e-35 151.4 157 49.0
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 8.5e-35 151.0 161 50.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-34 150.6 161 50.9
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.9e-34 149.8 160 50.0
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.5e-34 149.4 165 47.9
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.5e-34 149.4 162 48.8
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.2e-34 149.1 161 49.7
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.7e-33 146.0 161 46.6
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 6.1e-33 144.8 156 48.1
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.4e-32 143.7 156 48.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.4e-32 143.7 159 47.2
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.4e-32 143.7 160 45.0
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.3e-32 142.9 156 44.9
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 4.0e-32 142.1 159 47.8
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.0e-32 142.1 157 48.4
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 5.2e-32 141.7 168 45.8
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 6.8e-32 141.4 144 50.0
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.8e-32 141.4 154 50.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.2e-31 140.6 160 43.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-31 140.2 156 46.8
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.5e-31 140.2 158 48.1
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.0e-31 139.8 161 46.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 2.6e-31 139.4 157 45.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.4e-31 139.0 156 46.2
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 3.4e-31 139.0 159 47.2
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 4.4e-31 138.7 156 45.5
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.3e-30 137.1 161 44.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.7e-30 136.7 156 45.5
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.7e-30 136.7 156 45.5
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.2e-30 136.3 162 46.3
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.8e-30 136.0 157 45.2
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 8.3e-30 134.4 158 46.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.8e-29 133.3 121 53.7
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 5.9e-28 128.3 156 44.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.0e-27 127.5 160 45.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.3e-27 126.3 157 43.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 5.0e-27 125.2 156 42.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.0e-27 125.2 157 43.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 5.0e-27 125.2 161 41.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.1e-26 124.0 158 43.7
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.9e-26 123.2 156 42.3
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-26 123.2 159 42.1
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.9e-26 123.2 159 44.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.9e-26 123.2 162 41.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 3.3e-26 122.5 159 43.4
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 5.5e-26 121.7 162 40.7
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.5e-26 120.9 156 40.4
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-25 120.6 157 42.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 2.1e-25 119.8 160 41.9
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 3.6e-25 119.0 163 39.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 4.7e-25 118.6 156 42.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 4.7e-25 118.6 146 46.6
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.4e-24 117.1 151 42.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 8.9e-24 114.4 146 41.8
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 8.9e-24 114.4 169 40.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 6.3e-22 108.2 167 40.1
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 9.2e-21 104.4 146 41.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 9.2e-21 104.4 146 41.1
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 9.2e-21 104.4 146 41.1
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.6e-20 103.6 146 41.1
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.3e-19 100.5 156 37.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.7e-19 100.1 173 34.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.3e-19 99.8 156 35.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.3e-18 95.5 176 34.7
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.5e-18 94.4 75 58.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-16 90.5 143 37.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.5e-15 87.0 76 53.9
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.8e-15 85.1 173 31.8
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.3e-14 84.0 172 30.8
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.2e-14 83.2 84 47.6
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 4.9e-14 82.0 101 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 8.3e-14 81.3 176 31.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.3e-14 81.3 171 31.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.8e-13 80.1 168 31.0


User provided reference genes

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