Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g039110.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 1.2e-80 303.1 159 100.0
Solyc06g033930.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 3.2e-28 129.0 194 48.5
Sopen03g011550 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-27 125.9 78 80.8
Sopen12g017720 Solanum pennellii HOM05D000006 ORTHO05D000001 1.0e-26 124.0 111 55.0
Solyc12g038100.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 3.9e-26 122.1 122 50.0
Migut.G01154 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.0e-23 112.1 107 53.3
Migut.E01660 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.0e-22 109.8 107 52.3
Migut.E01000 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.9e-21 105.1 104 51.0
Migut.J01067 Erythranthe guttata HOM05D000002 ORTHO05D000001 1.2e-19 100.5 116 46.6
Migut.C00657 Erythranthe guttata HOM05D000002 ORTHO05D000001 6.0e-19 98.2 89 52.8
Nitab4.5_0002521g0050 Nicotiana tabacum HOM05D000002 ORTHO05D000001 6.6e-18 94.7 109 48.6
Solyc05g025970.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 3.3e-17 92.4 90 54.4
Sopen06g014070 Solanum pennellii HOM05D000006 ORTHO05D000001 3.3e-17 92.4 104 56.7
Peaxi162Scf00168g01729 Petunia axillaris HOM05D000002 ORTHO05D000001 1.3e-16 90.5 122 39.3
Peaxi162Scf00153g01013 Petunia axillaris HOM05D000002 ORTHO05D000001 8.1e-16 87.8 104 43.3
Peaxi162Scf00063g00071 Petunia axillaris HOM05D000002 ORTHO05D000001 9.0e-15 84.3 93 44.1
Peaxi162Scf00006g00121 Petunia axillaris HOM05D000002 ORTHO05D000001 5.8e-14 81.6 103 39.8
Sopen01g017880 Solanum pennellii HOM05D000002 ORTHO05D000001 9.9e-14 80.9 103 38.8
Nitab4.5_0000653g0120 Nicotiana tabacum HOM05D000002 ORTHO05D000001 3.8e-13 79.0 99 39.4
Peaxi162Scf00136g00193 Petunia axillaris HOM05D000002 ORTHO05D000001 3.8e-13 79.0 83 45.8
Peaxi162Scf00718g00053 Petunia axillaris HOM05D000002 ORTHO05D000001 3.8e-13 79.0 121 38.0
Nitab4.5_0000243g0060 Nicotiana tabacum HOM05D000002 ORTHO05D000001 1.4e-12 77.0 104 39.4
Peaxi162Scf00203g00072 Petunia axillaris HOM05D000002 ORTHO05D000001 1.4e-12 77.0 87 42.5
Atru.chr7.838 Acer truncatum HOM05D000002 ORTHO05D000001 5.4e-12 75.1 102 37.3
Lj2g0024035 Lotus japonicus HOM05D000002 ORTHO05D000001 9.3e-12 74.3 103 39.8
Hma1.2p1_0018F.1_g012350 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.6e-11 72.0 113 36.3
Nitab4.5_0002098g0060 Nicotiana tabacum HOM05D000002 ORTHO05D000001 4.6e-11 72.0 54 63.0
PSO832G3798 Papaver somniferum HOM05D000002 ORTHO05D000001 7.9e-11 71.2 100 39.0
Peaxi162Scf00404g00036 Petunia axillaris HOM05D000002 ORTHO05D000001 7.9e-11 71.2 61 50.8
TPR.G8161 Trifolium pratense HOM05D000002 ORTHO05D000001 1.0e-10 70.9 122 36.1
Hma1.2p1_0763F.1_g214730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.7e-10 70.1 103 36.9
Nitab4.5_0004600g0030 Nicotiana tabacum HOM05D000002 ORTHO05D000001 1.7e-10 70.1 83 43.4
Sopen11g003490 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-10 70.1 124 36.3
Nitab4.5_0000027g0330 Nicotiana tabacum HOM05D000002 ORTHO05D000001 3.0e-10 69.3 111 34.2
PSO541G4865 Papaver somniferum HOM05D000002 ORTHO05D000001 3.9e-10 68.9 133 31.6
Psat7g134120 Pisum sativum HOM05D000002 ORTHO05D000001 5.1e-10 68.6 104 38.5
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 5.1e-10 68.6 133 32.3
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 6.6e-10 68.2 127 38.6
Atru.chr4.3156 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-09 67.4 96 38.5
Psat2g152960 Pisum sativum HOM05D000002 ORTHO05D000001 1.1e-09 67.4 107 36.4
Psat6g102280 Pisum sativum HOM05D000002 ORTHO05D000001 1.1e-09 67.4 107 36.4
Sopen05g011750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 67.0 124 34.7
Sopen12g023510 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-09 67.0 124 35.5
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 1.9e-09 66.6 130 29.2
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 2.5e-09 66.2 124 31.5
Peaxi162Scf00028g00051 Petunia axillaris HOM05D000002 ORTHO05D000001 2.5e-09 66.2 70 42.9
Hma1.2p1_0577F.1_g182200 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.3e-09 65.9 104 37.5
Psat5g305960 Pisum sativum HOM05D000002 ORTHO05D000001 3.3e-09 65.9 127 34.6
Actinidia35992 Actinidia chinensis HOM05D000002 ORTHO05D000001 5.6e-09 65.1 112 36.6
COL.COLO4_38540 Corchorus olitorius HOM05D026776 ORTHO05D000001 7.3e-09 64.7 106 34.0
COL.COLO4_18983 Corchorus olitorius HOM05D014020 ORTHO05D000001 9.6e-09 64.3 85 36.5
Migut.K01257 Erythranthe guttata HOM05D000002 ORTHO05D000001 9.6e-09 64.3 101 37.6
TPR.G5721 Trifolium pratense HOM05D000002 ORTHO05D000001 9.6e-09 64.3 116 35.3
TAR099G0005 Trochodendron aralioides HOM05D000002 ORTHO05D000001 9.6e-09 64.3 115 34.8
ECA233G4466 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-08 63.9 130 30.8
Sopen04g008990 Solanum pennellii HOM05D000002 ORTHO05D000001 1.6e-08 63.5 104 37.5
Migut.F01590 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-08 63.2 96 35.4
Migut.H01198 Erythranthe guttata HOM05D000002 ORTHO05D000001 2.1e-08 63.2 96 35.4
Psat7g227320 Pisum sativum HOM05D000002 ORTHO05D000001 2.8e-08 62.8 109 34.9
Rhsim05G0182900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.8e-08 62.8 104 37.5
Hma1.2p1_0462F.1_g158010 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.6e-08 62.4 83 38.6
Hma1.2p1_1940F.1_g308370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.6e-08 62.4 88 35.2
PSO339G5847 Papaver somniferum HOM05D000002 ORTHO05D000001 3.6e-08 62.4 83 41.0
Psat7g220520 Pisum sativum HOM05D000002 ORTHO05D000001 4.8e-08 62.0 83 37.3
VMungo0540G0563 Vigna mungo HOM05D000002 ORTHO05D000001 4.8e-08 62.0 101 34.7
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-08 61.6 83 38.6
CSS0045539 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.2e-08 61.6 83 38.6
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-08 61.2 83 38.6
PSO384G4937 Papaver somniferum HOM05D000002 ORTHO05D000001 8.1e-08 61.2 124 33.1
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-07 60.8 118 33.1
Atru.chr6.233 Acer truncatum HOM05D000002 ORTHO05D000001 1.4e-07 60.5 93 36.6
Aqoxy5G02395 Aquilegia oxysepala HOM05D000002 ORTHO05D000001 1.4e-07 60.5 118 30.5
Rhsim02G0160900 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.4e-07 60.5 106 35.8
Sopen04g009020 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-07 60.5 85 37.6
Sopen08g005850 Solanum pennellii HOM05D001396 ORTHO05D000001 1.4e-07 60.5 122 30.3
Atru.chr13.1786 Acer truncatum HOM05D000002 ORTHO05D000001 1.8e-07 60.1 93 37.6
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-07 60.1 122 32.0
Eucgr.E02344 Eucalyptus grandis HOM05D000002 ORTHO05D000001 1.8e-07 60.1 119 29.4
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.8e-07 60.1 104 38.5
Nitab4.5_0000485g0090 Nicotiana tabacum HOM05D000002 ORTHO05D000001 1.8e-07 60.1 116 30.2
Psat1g154000 Pisum sativum HOM05D000002 ORTHO05D000001 1.8e-07 60.1 101 35.6
Sopen01g029710 Solanum pennellii HOM05D000002 ORTHO05D000001 1.8e-07 60.1 106 34.9
Sopen08g005830 Solanum pennellii HOM05D001396 ORTHO05D000001 1.8e-07 60.1 106 34.0
RcHm_v2.0_Chr1g0337651 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-07 59.7 118 33.9
RcHm_v2.0_Chr2g0112811 Rosa chinensis HOM05D000002 ORTHO05D000001 2.4e-07 59.7 105 35.2
Sopen02g010030 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-07 59.7 78 43.6
Actinidia05383 Actinidia chinensis HOM05D000002 ORTHO05D000001 3.1e-07 59.3 94 36.2
CANSAT21G1279 Cannabis sativa HOM05D000002 ORTHO05D000001 3.1e-07 59.3 107 32.7
ECA248G2841 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-07 59.3 119 33.6
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 3.1e-07 59.3 106 34.9
COL.COLO4_12289 Corchorus olitorius HOM05D000002 ORTHO05D000001 4.0e-07 58.9 108 33.3
Migut.F01917 Erythranthe guttata HOM05D000002 ORTHO05D000001 4.0e-07 58.9 146 30.8
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 4.0e-07 58.9 100 34.0
TWI77G0605 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 4.0e-07 58.9 107 35.5
CSS0025864 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-07 58.5 83 37.3
Gorai.013G092800 Gossypium raimondii HOM05D000002 ORTHO05D000001 5.3e-07 58.5 85 37.6
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 5.3e-07 58.5 88 34.1
Atru.chr3.2937 Acer truncatum HOM05D000002 ORTHO05D000001 6.9e-07 58.2 99 37.4
Atru.chr6.1164 Acer truncatum HOM05D000002 ORTHO05D000001 6.9e-07 58.2 106 34.0
Atru.chr6.358 Acer truncatum HOM05D000002 ORTHO05D000001 6.9e-07 58.2 129 28.7
Duzib235G0480 Durio zibethinus HOM05D000002 ORTHO05D000001 6.9e-07 58.2 106 32.1
ECA240G0216 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.9e-07 58.2 119 33.6
CSS0011046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.0e-07 57.8 155 30.3
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 9.0e-07 57.8 98 33.7
Sopen11g022270 Solanum pennellii HOM05D000002 ORTHO05D000001 9.0e-07 57.8 82 39.0
TPR.G7779 Trifolium pratense HOM05D000002 ORTHO05D000001 9.0e-07 57.8 79 39.2
Dinv08503 Davidia involucrata HOM05D000002 ORTHO05D000001 1.2e-06 57.4 117 29.1
HanXRQChr15g0476521 Helianthus annuus HOM05D000002 ORTHO05D000001 1.2e-06 57.4 101 33.7
Dinv05898 Davidia involucrata HOM05D013570 ORTHO05D000001 1.5e-06 57.0 99 32.3
FvH4_6g36682 Fragaria vesca HOM05D025673 ORTHO05D000001 1.5e-06 57.0 111 30.6
CAN.G1859.1 Capsicum annuum HOM05D001133 ORTHO05D000941 2.0e-06 56.6 102 34.3
ECA236G4365 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-06 56.6 121 31.4
Peaxi162Scf00036g00053 Petunia axillaris HOM05D000002 ORTHO05D000001 2.0e-06 56.6 135 31.1
Sopen12g010660 Solanum pennellii HOM05D000002 ORTHO05D000001 2.0e-06 56.6 105 34.3
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 2.6e-06 56.2 97 33.0
RcHm_v2.0_Chr3g0482021 Rosa chinensis HOM05D000002 ORTHO05D000001 2.6e-06 56.2 102 33.3
Ciclev10006756m.g Citrus clementina HOM05D047940 ORTHO05D000001 3.4e-06 55.8 87 34.5
MELO3C013392.2 Cucumis melo HOM05D000002 ORTHO05D000001 3.4e-06 55.8 127 33.1
CsaV3_7G000640 Cucumis sativus L. HOM05D000002 ORTHO05D000001 3.4e-06 55.8 127 33.1
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 3.4e-06 55.8 100 34.0
RcHm_v2.0_Chr1g0355351 Rosa chinensis HOM05D000287 ORTHO05D000001 3.4e-06 55.8 110 30.0
Sopen06g017500 Solanum pennellii HOM05D000002 ORTHO05D000001 4.5e-06 55.5 105 34.3
TWI59G0793 Tripterygium wilfordii HOM05D000002 ORTHO05D000001 4.5e-06 55.5 132 31.8
VMungo1309G3040 Vigna mungo HOM05D000002 ORTHO05D000001 4.5e-06 55.5 101 31.7
HanXRQChr13g0407151 Helianthus annuus HOM05D000002 ORTHO05D000001 5.8e-06 55.1 115 27.0
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 5.8e-06 55.1 122 28.7
PSO384G4697 Papaver somniferum HOM05D000002 ORTHO05D000001 5.8e-06 55.1 116 34.5
PSO782G0612 Papaver somniferum HOM05D000002 ORTHO05D000001 5.8e-06 55.1 113 33.6
RcHm_v2.0_Chr5g0022021 Rosa chinensis HOM05D000002 ORTHO05D000001 5.8e-06 55.1 87 34.5
TAR180G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 5.8e-06 55.1 88 34.1
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 5.8e-06 55.1 121 31.4
ECA233G6231 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-06 54.7 121 30.6
ECA234G0762 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.6e-06 54.7 121 30.6
Eucgr.L00647 Eucalyptus grandis HOM05D000002 ORTHO05D000001 7.6e-06 54.7 93 34.4
PSO384G3528 Papaver somniferum HOM05D000002 ORTHO05D000001 7.6e-06 54.7 84 34.5
RcHm_v2.0_Chr6g0299971 Rosa chinensis HOM05D000002 ORTHO05D000001 7.6e-06 54.7 110 30.0
Sabra18G0040600 Salix brachista HOM05D000002 ORTHO05D010776 7.6e-06 54.7 89 33.7
CANSAT25G3406 Cannabis sativa HOM05D024232 ORTHO05D000001 9.9e-06 54.3 73 35.6
ECA236G2445 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.9e-06 54.3 116 31.0
Migut.J01156 Erythranthe guttata HOM05D000002 ORTHO05D000001 9.9e-06 54.3 85 34.1
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 9.9e-06 54.3 166 28.9
Nitab4.5_0003631g0030 Nicotiana tabacum HOM05D000002 ORTHO05D000001 9.9e-06 54.3 114 32.5
Solyc02g030370.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 9.9e-06 54.3 78 35.9


User provided reference genes

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