Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 2.0e-138 495.7 251 100.0
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 4.2e-136 488.0 251 97.6
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 2.8e-132 475.3 251 95.2
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-125 451.4 251 90.0
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 5.8e-125 451.1 251 90.0
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.3e-124 449.9 251 89.6
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.1e-123 446.8 251 87.6
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-123 446.4 251 89.6
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-122 442.2 251 88.8
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.3e-121 439.9 251 87.3
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 7.3e-120 434.1 251 86.1
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-116 422.2 250 85.2
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 2.4e-115 419.1 251 83.3
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 3.2e-115 418.7 251 81.3
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.7e-114 415.6 251 81.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 4.6e-114 414.8 251 80.9
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 7.8e-114 414.1 251 81.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 3.9e-113 411.8 251 81.3
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.5e-112 409.8 251 80.9
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 3.3e-112 408.7 251 81.3
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 7.3e-112 407.5 251 80.5
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.2e-111 406.8 251 79.3
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.8e-111 405.6 251 78.9
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 8.1e-111 404.1 251 78.9
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.8e-110 402.9 251 79.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.8e-110 402.9 251 79.7
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.8e-110 402.9 251 77.7
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.3e-110 402.5 251 79.3
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.3e-110 402.5 251 79.7
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 4.0e-110 401.7 251 79.3
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 4.0e-110 401.7 251 77.3
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 6.8e-110 401.0 251 79.3
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 8.9e-110 400.6 251 79.3
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.2e-109 400.2 250 78.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.5e-109 399.8 251 78.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.5e-109 399.8 251 78.9
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.5e-109 399.8 251 78.9
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 2.6e-109 399.1 251 80.1
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 5.8e-109 397.9 251 76.9
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 1.3e-108 396.7 250 78.4
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.7e-108 396.4 251 77.3
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.7e-108 396.4 251 78.1
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 3.7e-108 395.2 251 78.9
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 3.7e-108 395.2 251 78.1
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 3.7e-108 395.2 271 73.4
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 4.9e-108 394.8 251 76.5
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 6.4e-108 394.4 251 77.7
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.1e-107 393.7 250 77.6
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-107 393.3 244 79.5
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.4e-107 392.5 251 77.7
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 2.4e-107 392.5 251 78.5
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 3.2e-107 392.1 288 70.5
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 3.2e-107 392.1 251 77.7
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 5.4e-107 391.3 269 72.5
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.2e-106 390.2 251 76.5
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 1.2e-106 390.2 251 78.1
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.6e-106 389.8 251 77.3
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 4.6e-106 388.3 251 75.7
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.0e-106 387.9 251 76.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-105 387.1 252 76.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.3e-105 386.7 251 76.5
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.3e-105 386.7 251 76.5
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.3e-105 386.0 251 75.3
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.9e-105 385.2 251 74.9
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 3.9e-105 385.2 251 76.1
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.1e-105 384.8 251 76.1
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.1e-105 384.8 251 76.1
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 5.1e-105 384.8 251 76.5
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 8.6e-105 384.0 251 75.7
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.1e-104 383.6 251 75.7
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 1.1e-104 383.6 251 73.3
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.9e-104 382.9 242 78.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.9e-104 382.9 278 71.6
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.5e-104 382.5 244 78.3
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 7.3e-104 380.9 251 74.9
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 1.2e-103 380.2 251 75.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.6e-103 379.8 251 74.9
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.1e-103 379.4 251 74.5
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-103 379.0 251 74.1
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.8e-103 379.0 251 75.7
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 8.1e-103 377.5 251 74.5
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 1.4e-102 376.7 251 74.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.2e-101 373.6 250 73.2
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.0e-101 372.9 271 70.1
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.6e-101 372.5 251 76.1
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 3.4e-101 372.1 251 72.5
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.4e-101 371.7 251 73.7
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.6e-101 370.9 251 73.3
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.8e-100 368.6 251 70.5
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.4e-99 365.9 312 63.5
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 5.4e-99 364.8 245 73.9
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 7.1e-99 364.4 251 70.9
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.2e-98 363.6 251 72.1
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 4.6e-98 361.7 251 70.1
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 4.6e-98 361.7 251 71.7
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.0e-97 360.5 251 69.3
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.3e-97 359.4 251 69.3
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 5.1e-97 358.2 251 69.7
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 5.1e-97 358.2 251 69.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 5.1e-97 358.2 251 69.7
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 5.1e-97 358.2 251 70.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.9e-96 356.3 251 72.1
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 3.3e-96 355.5 248 69.0
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 5.6e-96 354.8 251 70.1
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 9.6e-96 354.0 251 68.9
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 2.1e-95 352.8 251 69.7
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-94 349.7 227 80.2
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 2.4e-94 349.4 250 73.6
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 2.4e-94 349.4 251 68.9
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 7.6e-93 344.4 251 68.1
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 2.2e-92 342.8 251 67.7
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 9.3e-91 337.4 252 63.9
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 7.3e-88 327.8 192 86.5
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 6.9e-86 321.2 207 76.3
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 2.9e-84 315.8 251 66.9
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.2e-74 283.9 251 55.8
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 3.7e-71 272.3 161 81.4
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 2.4e-70 269.6 209 66.0
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 9.0e-70 267.7 187 71.7
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 9.7e-64 247.7 144 82.6
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-61 238.0 142 85.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.1e-57 225.3 286 43.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 5.7e-56 221.9 148 77.0
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.3e-47 194.1 255 45.9
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.0e-44 184.5 152 61.8
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 7.2e-43 178.3 144 68.8
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-41 174.5 112 76.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 6.7e-41 171.8 118 72.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 1.8e-38 163.7 100 78.0
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 2.0e-37 160.2 344 34.0
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.0e-36 157.9 100 79.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.9e-36 156.4 92 84.8
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-31 140.6 80 85.0
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-25 120.2 72 80.6
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.1e-22 111.3 67 79.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-21 107.1 77 68.8
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 4.0e-17 92.8 86 55.8
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 5.4e-14 82.4 57 68.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 8.6e-12 75.1 45 71.1
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 6.2e-10 68.9 43 76.7


User provided reference genes

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