Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.0e-101 372.5 191 100.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.5e-66 255.4 137 97.1
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.9e-52 209.1 137 76.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 6.9e-46 188.0 132 70.5
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 7.6e-45 184.5 137 69.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.7e-44 183.3 133 69.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 6.5e-44 181.4 133 70.7
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 9.3e-43 177.6 146 63.7
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 9.3e-43 177.6 137 67.2
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.7e-42 176.0 133 67.7
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.7e-42 176.0 137 65.0
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.6e-42 175.3 133 66.9
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 4.6e-42 175.3 136 65.4
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.6e-42 175.3 136 64.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 6.1e-42 174.9 136 65.4
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.1e-42 174.9 140 69.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.9e-42 174.5 136 64.7
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 7.9e-42 174.5 133 65.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.0e-41 174.1 129 69.8
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.3e-41 173.7 133 66.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.3e-41 173.7 158 60.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.8e-41 173.3 136 65.4
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-41 172.9 133 66.2
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.3e-41 172.9 133 66.2
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.3e-41 172.9 133 66.2
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.0e-41 172.6 136 64.7
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.0e-41 172.6 136 64.7
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 3.0e-41 172.6 136 64.0
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 5.1e-41 171.8 136 64.7
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 5.1e-41 171.8 136 64.7
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 5.1e-41 171.8 132 65.9
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.1e-41 171.8 136 64.7
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 6.7e-41 171.4 133 66.2
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 6.7e-41 171.4 133 66.9
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.5e-40 170.2 137 63.5
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.5e-40 170.2 133 63.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.5e-40 170.2 137 65.0
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.5e-40 170.2 134 64.9
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.9e-40 169.9 131 65.6
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.5e-40 169.5 136 62.5
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 5.7e-40 168.3 133 64.7
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.4e-40 167.9 133 63.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 7.4e-40 167.9 137 63.5
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-39 167.2 136 61.0
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.6e-39 166.8 136 62.5
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.8e-39 166.0 133 65.4
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 2.8e-39 166.0 129 65.1
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 3.7e-39 165.6 131 64.1
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.7e-39 165.6 131 64.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.7e-39 165.6 131 64.1
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 3.7e-39 165.6 137 64.2
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 3.7e-39 165.6 133 64.7
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.8e-39 165.2 136 61.8
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.1e-38 162.5 133 61.7
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.1e-38 162.5 133 65.4
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.1e-38 162.5 136 60.3
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.3e-38 161.8 133 66.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 6.9e-38 161.4 147 59.9
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 6.9e-38 161.4 129 67.4
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.2e-37 160.6 133 62.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.2e-37 160.6 133 65.4
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.5e-37 160.2 133 62.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.5e-37 160.2 147 57.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.0e-37 159.8 133 63.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.6e-37 159.5 133 62.4
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.6e-37 159.5 129 62.8
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.4e-37 159.1 133 61.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 7.7e-37 157.9 126 63.5
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.7e-36 156.8 133 60.2
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 2.2e-36 156.4 146 58.9
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 2.2e-36 156.4 115 70.4
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 2.9e-36 156.0 135 62.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 6.5e-36 154.8 133 63.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.1e-35 154.1 141 56.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.1e-35 154.1 129 60.5
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 2.5e-35 152.9 132 58.3
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 9.4e-35 151.0 137 61.3
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.1e-34 149.8 144 58.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 7.9e-34 147.9 133 59.4
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.9e-34 147.9 136 51.5
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 3.0e-33 146.0 134 54.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 8.8e-33 144.4 133 59.4
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.1e-32 144.1 134 56.7
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.6e-32 142.9 146 54.1
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.6e-32 142.9 146 54.1
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 2.6e-32 142.9 132 55.3
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-31 140.2 134 59.0
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.2e-31 139.8 134 58.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 6.3e-31 138.3 137 54.7
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-30 137.1 131 56.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-30 136.7 130 56.2
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.2e-29 134.0 107 64.5
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.5e-29 133.7 137 51.1
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-29 133.3 132 55.3
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 5.9e-29 131.7 133 50.4
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 8.5e-28 127.9 137 48.9
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 3.2e-27 125.9 134 50.7
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.2e-27 125.6 129 48.8
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.7e-26 122.9 106 61.3
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.9e-26 121.3 94 66.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.0e-25 120.9 134 53.0
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 8.8e-25 117.9 134 50.0
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.4e-24 115.5 137 51.1
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.4e-24 115.5 147 49.0
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.7e-24 115.2 158 44.3
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.2e-23 113.2 103 59.2
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-23 112.5 152 42.1
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 3.1e-22 109.4 76 68.4
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 4.1e-22 109.0 133 46.6
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 5.9e-21 105.1 190 35.8
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.3e-20 104.0 133 41.4
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.1e-19 100.9 181 35.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 3.6e-18 95.9 133 40.6
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.0e-17 94.4 138 40.6
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-17 92.8 159 39.6
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.5e-16 90.5 154 39.6
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.6e-16 89.7 182 35.2
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.4e-16 89.0 155 39.4
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 5.7e-16 88.6 105 49.5
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.3e-15 87.4 155 37.4
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 4.8e-15 85.5 103 50.5
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 6.3e-15 85.1 145 35.9
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 6.3e-15 85.1 134 39.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-14 84.3 70 61.4
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.2e-12 76.6 88 48.9
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.9e-12 76.3 156 35.9
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 8.5e-12 74.7 156 35.9
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.9e-11 73.6 145 33.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.2e-11 72.8 137 38.7
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 4.0e-09 65.9 82 46.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 5.2e-09 65.5 177 29.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 4.4e-08 62.4 147 34.0
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.8e-07 59.7 142 31.0
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 6.3e-07 58.5 152 30.9
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.4e-06 56.6 161 32.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 9.1e-06 54.7 35 74.3


User provided reference genes

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