Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.0e-108 396.7 198 100.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 8.6e-100 367.1 196 94.4
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.3e-63 246.9 233 60.1
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 7.6e-56 221.1 212 60.8
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.7e-42 176.8 220 48.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 8.5e-39 164.5 217 48.8
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 4.2e-38 162.2 222 45.9
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 7.2e-38 161.4 221 48.0
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.4e-36 157.1 217 47.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.8e-36 156.8 221 46.2
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.7e-35 151.8 218 45.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 3.1e-33 146.0 218 43.1
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 7.0e-33 144.8 212 44.8
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 9.1e-33 144.4 246 42.7
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 1.2e-32 144.1 215 44.2
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.6e-32 143.7 225 43.1
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.0e-32 143.3 196 47.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.6e-32 142.9 219 42.5
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.5e-32 142.1 224 43.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 4.5e-32 142.1 224 42.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.5e-32 142.1 146 53.4
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.7e-31 140.2 211 45.0
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 3.8e-31 139.0 229 43.7
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 6.5e-31 138.3 107 65.4
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 6.5e-31 138.3 209 42.1
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.1e-30 137.5 219 42.9
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.9e-30 136.7 221 43.0
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.9e-30 136.7 226 41.2
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.5e-30 136.3 206 43.2
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 3.2e-30 136.0 206 43.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 5.5e-30 135.2 209 44.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.2e-29 134.0 229 40.6
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-29 133.7 221 39.8
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.7e-29 132.9 214 41.1
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 4.7e-29 132.1 222 41.9
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 8.0e-29 131.3 172 46.5
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.4e-28 130.6 211 42.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.4e-28 130.6 215 39.1
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.8e-28 130.2 212 43.9
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 1.8e-28 130.2 210 41.9
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.8e-28 130.2 222 40.5
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 3.0e-28 129.4 215 41.9
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 3.0e-28 129.4 222 41.0
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.0e-28 129.4 181 44.8
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 8.8e-28 127.9 159 45.3
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-27 127.5 115 56.5
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 1.5e-27 127.1 121 54.5
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.0e-27 126.7 155 47.1
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 2.0e-27 126.7 183 38.3
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.6e-27 126.3 226 39.4
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 4.4e-27 125.6 155 46.5
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 4.4e-27 125.6 155 46.5
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.4e-27 125.6 122 54.9
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 5.7e-27 125.2 131 48.1
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 7.5e-27 124.8 175 45.1
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.7e-27 124.4 190 45.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.3e-26 124.0 213 39.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 1.7e-26 123.6 166 45.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.7e-26 123.6 107 58.9
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.2e-26 123.2 106 57.5
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 4.8e-26 122.1 213 38.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.8e-26 122.1 197 40.6
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 6.3e-26 121.7 199 41.2
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 8.2e-26 121.3 220 41.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.4e-25 120.6 158 43.7
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.4e-25 120.6 111 56.8
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.4e-25 120.6 111 56.8
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.4e-25 120.6 155 44.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.4e-25 119.8 145 48.3
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.4e-25 119.8 145 48.3
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 3.1e-25 119.4 212 38.2
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 4.1e-25 119.0 171 45.0
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 4.1e-25 119.0 105 55.2
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 9.1e-25 117.9 209 39.2
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 9.1e-25 117.9 93 65.6
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.2e-24 117.5 202 42.6
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.2e-24 117.5 200 39.0
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.6e-24 117.1 148 49.3
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.2e-23 113.2 203 41.4
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.9e-23 112.8 218 38.5
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.5e-23 111.7 208 38.9
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.1e-22 110.9 109 51.4
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 5.5e-22 108.6 192 35.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 7.2e-22 108.2 156 41.7
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 7.2e-22 108.2 82 62.2
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 1.2e-21 107.5 172 41.3
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.6e-21 107.1 85 63.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.6e-21 105.9 150 44.0
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 8.0e-21 104.8 111 53.2
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.4e-20 104.0 151 41.7
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-20 103.2 82 65.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.3e-20 103.2 82 65.9
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.2e-19 100.9 213 36.2
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.5e-19 100.5 220 36.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 2.0e-19 100.1 220 37.3
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.3e-18 97.4 154 38.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-18 97.4 175 36.0
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-18 97.4 166 37.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.3e-18 97.4 165 37.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.7e-18 97.1 175 35.4
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 3.7e-18 95.9 148 40.5
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-18 95.9 72 65.3
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 6.3e-18 95.1 119 44.5
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-17 94.4 208 35.1
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.8e-17 93.6 148 35.8
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.1e-17 92.8 96 43.8
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 3.1e-17 92.8 96 43.8
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.1e-17 92.4 143 40.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 5.4e-17 92.0 161 34.8
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 7.0e-17 91.7 143 40.6
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 9.1e-17 91.3 96 43.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.6e-16 90.5 148 35.8
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.0e-16 90.1 174 36.8
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.9e-16 88.6 223 33.6
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 7.7e-16 88.2 190 35.3
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.0e-15 87.8 120 43.3
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-15 87.8 78 57.7
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.0e-15 87.8 88 51.1
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-15 87.8 66 65.2
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 1.5e-14 84.0 92 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.9e-14 83.6 94 46.8
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.5e-14 83.2 220 34.1
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.5e-14 82.0 66 60.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 5.5e-14 82.0 164 37.2
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.7e-13 79.0 52 73.1
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-12 75.5 103 41.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 5.2e-12 75.5 67 53.7
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-11 73.6 175 35.4
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-10 70.5 172 34.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 6.3e-10 68.6 63 47.6
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 6.3e-10 68.6 184 34.8
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.7e-08 63.2 42 69.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 5.9e-08 62.0 38 73.7
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.8e-07 59.3 146 30.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.5e-06 56.6 60 53.3


User provided reference genes

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