Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038570.3 Solanum lycopersicum HOM05D000291 ORTHO05D037628 1.2e-55 219.5 106 100.0
Sopen12g018860 Solanum pennellii HOM05D034337 ORTHO05D037628 9.8e-18 93.6 46 93.5
PGSC0003DMG400013761 Solanum tuberosum HOM05D000291 ORTHO05D001358 8.3e-17 90.5 54 74.1
Peaxi162Scf00870g00003 Petunia axillaris HOM05D000291 ORTHO05D001358 1.3e-14 83.2 52 67.3
Nitab4.5_0000209g0250 Nicotiana tabacum HOM05D000291 ORTHO05D001358 1.5e-13 79.7 52 63.5
Nitab4.5_0013235g0010 Nicotiana tabacum HOM05D000291 ORTHO05D001358 1.5e-13 79.7 52 63.5
CSS0002122 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D001358 2.1e-12 75.9 56 62.5
Solyc08g059660.3 Solanum lycopersicum HOM05D000291 ORTHO05D001358 2.8e-12 75.5 54 66.7
Sopen08g009580 Solanum pennellii HOM05D000291 ORTHO05D001358 2.8e-12 75.5 54 66.7
Lj7C723T7 Lonicera japonica HOM05D000291 ORTHO05D001358 3.6e-12 75.1 55 61.8
Rhsim02G0201500 Rhododendron simsii HOM05D000291 ORTHO05D001358 6.2e-12 74.3 56 64.3
Potri.018G026900 Populus trichocarpa HOM05D000291 ORTHO05D001358 1.8e-11 72.8 55 60.0
Sabra18G0029500 Salix brachista HOM05D000291 ORTHO05D001358 2.3e-11 72.4 55 60.0
CAN.G19.16 Capsicum annuum HOM05D000291 ORTHO05D001358 3.1e-11 72.0 53 58.5
Hma1.2p1_0243F.1_g100841 Hydrangea macrophylla HOM05D000291 ORTHO05D001358 2.0e-10 69.3 56 60.7
Dinv30130 Davidia involucrata HOM05D000291 ORTHO05D001358 5.8e-10 67.8 58 56.9
DCAR_006214 Daucus carota HOM05D000291 ORTHO05D001358 9.9e-10 67.0 54 59.3
SalBow4G3352 Salvia bowleyana HOM05D000291 ORTHO05D001358 9.9e-10 67.0 54 57.4
Duzib168G0437 Durio zibethinus HOM05D000291 ORTHO05D001358 1.3e-09 66.6 55 61.8
FvH4_2g28990 Fragaria vesca HOM05D000291 ORTHO05D001358 1.3e-09 66.6 55 56.4
Oeu053126.1 Olea europaea HOM05D000291 ORTHO05D001358 1.3e-09 66.6 56 53.6
Dinv08639 Davidia involucrata HOM05D000291 ORTHO05D001358 1.7e-09 66.2 53 58.5
Oeu053125.1 Olea europaea HOM05D000291 ORTHO05D001358 1.7e-09 66.2 56 51.8
SGA_v2.0_scaffold64G21942 Striga asiatica HOM05D000291 ORTHO05D001358 2.2e-09 65.9 55 56.4
TWI63G1638 Tripterygium wilfordii HOM05D000291 ORTHO05D001358 2.2e-09 65.9 56 51.8
Potri.006G255000 Populus trichocarpa HOM05D000291 ORTHO05D001358 2.9e-09 65.5 55 54.5
SalBow1G1726 Salvia bowleyana HOM05D000291 ORTHO05D001358 2.9e-09 65.5 55 54.5
Gohir.A07G028400 Gossypium hirsutum HOM05D000291 ORTHO05D001358 3.8e-09 65.1 55 58.2
Gohir.D07G032500 Gossypium hirsutum HOM05D000291 ORTHO05D001358 3.8e-09 65.1 55 58.2
Gorai.001G033900 Gossypium raimondii HOM05D000291 ORTHO05D001358 3.8e-09 65.1 55 58.2
Gohir.A05G053600 Gossypium hirsutum HOM05D000291 ORTHO05D001358 4.9e-09 64.7 53 54.7
Gohir.D05G057400 Gossypium hirsutum HOM05D000291 ORTHO05D001358 4.9e-09 64.7 53 54.7
Gorai.009G058500 Gossypium raimondii HOM05D000291 ORTHO05D001358 6.4e-09 64.3 53 54.7
Sabra06G0199200 Salix brachista HOM05D000291 ORTHO05D001358 6.4e-09 64.3 55 50.9
Ciclev10007706m.g Citrus clementina HOM05D000291 ORTHO05D001358 8.4e-09 63.9 55 56.4
CDE03G0463 Ceratophyllum demersum HOM05D000291 ORTHO05D001358 1.4e-08 63.2 52 57.7
Atru.chr7.2433 Acer truncatum HOM05D000291 ORTHO05D001358 1.9e-08 62.8 51 56.9
MSTRG.1726 Avicennia marina HOM05D000291 ORTHO05D001358 1.9e-08 62.8 56 50.0
Thecc.09G024200 Theobroma cacao HOM05D000291 ORTHO05D001358 1.9e-08 62.8 55 56.4
MD08G1150700 Malus domestica HOM05D000291 ORTHO05D001358 2.4e-08 62.4 53 52.8
RcHm_v2.0_Chr6g0297851 Rosa chinensis HOM05D000291 ORTHO05D001358 2.4e-08 62.4 55 52.7
TAR626G1092 Trochodendron aralioides HOM05D000291 ORTHO05D001358 2.4e-08 62.4 53 58.5
COL.COLO4_18863 Corchorus olitorius HOM05D000291 ORTHO05D001358 4.1e-08 61.6 55 56.4
Duzib187G1002 Durio zibethinus HOM05D000291 ORTHO05D001358 4.1e-08 61.6 55 58.2
HanXRQChr13g0403001 Helianthus annuus HOM05D000291 ORTHO05D001358 4.1e-08 61.6 50 58.0
MD00G1144700 Malus domestica HOM05D000291 ORTHO05D001358 4.1e-08 61.6 53 52.8
unitig_32.g10921 Utricularia gibba HOM05D000291 ORTHO05D001358 4.1e-08 61.6 52 55.8
CDE04G3496 Ceratophyllum demersum HOM05D000291 ORTHO05D001358 7.1e-08 60.8 52 55.8
Nitab4.5_0001354g0040 Nicotiana tabacum HOM05D000291 ORTHO05D001358 7.1e-08 60.8 50 56.0
Ca_15740_v3 Cicer arietinum L. HOM05D000291 ORTHO05D001358 1.2e-07 60.1 52 51.9
DCAR_001503 Daucus carota HOM05D000291 ORTHO05D001358 1.2e-07 60.1 45 62.2
Lalb_Chr08g0244101 Lupinus albus HOM05D000291 ORTHO05D001358 1.2e-07 60.1 55 52.7
VMungo1309G2744 Vigna mungo HOM05D000291 ORTHO05D001358 1.2e-07 60.1 55 54.5
COL.COLO4_35126 Corchorus olitorius HOM05D000291 ORTHO05D001358 1.6e-07 59.7 54 55.6
Glyma.04G066400 Glycine max HOM05D000291 ORTHO05D001358 1.6e-07 59.7 55 52.7
Glyma.06G067800 Glycine max HOM05D000291 ORTHO05D001358 1.6e-07 59.7 55 52.7
Manes.16G122400 Manihot esculenta HOM05D000291 ORTHO05D001358 1.6e-07 59.7 57 49.1
Phvul.009G092600 Phaseolus vulgaris HOM05D000291 ORTHO05D001358 1.6e-07 59.7 55 54.5
Prupe.1G481500 Prunus persica HOM05D000291 ORTHO05D001358 1.6e-07 59.7 52 55.8
TWI32G0991 Tripterygium wilfordii HOM05D000291 ORTHO05D001358 1.6e-07 59.7 56 48.2
CSS0014772 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D001358 2.1e-07 59.3 54 55.6
ECA246G3497 Erigeron canadensis HOM05D000291 ORTHO05D001358 2.1e-07 59.3 50 56.0
Cfa013141 Carpinus fangiana HOM05D000291 ORTHO05D001358 2.7e-07 58.9 52 53.8
Lj1g0018381 Lotus japonicus HOM05D000291 ORTHO05D001358 2.7e-07 58.9 55 52.7
Sc09g0008230 Simmondsia chinensis HOM05D000291 ORTHO05D001358 3.5e-07 58.5 56 57.1
FAN27G0250 Fragaria x ananassa HOM05D000291 ORTHO05D001358 4.6e-07 58.2 55 54.5
Psat5g029160 Pisum sativum HOM05D000291 ORTHO05D001358 4.6e-07 58.2 51 51.0
QL02p021596 Quercus lobata HOM05D000291 ORTHO05D001358 4.6e-07 58.2 52 50.0
Cc08_g00580 Coffea canephora HOM05D000291 ORTHO05D001358 6.0e-07 57.8 43 62.8
Haze_21514 Corylus avellana HOM05D000291 ORTHO05D001358 6.0e-07 57.8 52 51.9
Sopen09g015850 Solanum pennellii HOM05D034337 ORTHO05D037628 6.0e-07 57.8 39 66.7
Aqoxy7G03325 Aquilegia oxysepala HOM05D000291 ORTHO05D001358 7.8e-07 57.4 49 49.0
TPR.G3122 Trifolium pratense HOM05D000291 ORTHO05D001358 7.8e-07 57.4 52 51.9
unitig_32.g11525 Utricularia gibba HOM05D000291 ORTHO05D001358 7.8e-07 57.4 54 50.0
ECA233G0203 Erigeron canadensis HOM05D000291 ORTHO05D001358 1.0e-06 57.0 52 51.9
HanXRQChr10g0296821 Helianthus annuus HOM05D000291 ORTHO05D001358 1.0e-06 57.0 50 52.0
Medtr3g106900 Medicago truncatula HOM05D000291 ORTHO05D001358 1.0e-06 57.0 52 51.9
TAR625G0677 Trochodendron aralioides HOM05D000291 ORTHO05D001358 1.0e-06 57.0 52 50.0
GSVIVG01035864001 Vitis vinifera HOM05D000291 ORTHO05D001358 1.0e-06 57.0 52 50.0
Lsat_1_v5_gn_6_21360 Lactuca sativa HOM05D000291 ORTHO05D001358 1.3e-06 56.6 50 52.0
PGSC0003DMG400015846 Solanum tuberosum HOM05D000291 ORTHO05D001358 1.3e-06 56.6 41 61.0
CiPaw.04G173700 Carya illinoinensis HOM05D000291 ORTHO05D001358 1.7e-06 56.2 56 50.0
CiPaw.07G223500 Carya illinoinensis HOM05D000291 ORTHO05D001358 1.7e-06 56.2 52 51.9
Solyc06g011450.3 Solanum lycopersicum HOM05D000291 ORTHO05D001358 1.7e-06 56.2 41 61.0
Sopen06g006550 Solanum pennellii HOM05D000291 ORTHO05D001358 1.7e-06 56.2 41 61.0
Ciclev10007747m.g Citrus clementina HOM05D000291 ORTHO05D001358 2.3e-06 55.8 56 50.0
Lsat_1_v5_gn_5_29520 Lactuca sativa HOM05D000291 ORTHO05D001358 3.9e-06 55.1 49 55.1
Eucgr.C02768 Eucalyptus grandis HOM05D000291 ORTHO05D001358 6.6e-06 54.3 54 46.3
Aqoxy7G03661 Aquilegia oxysepala HOM05D000291 ORTHO05D001358 8.6e-06 53.9 53 52.8
CANSAT25G3163 Cannabis sativa HOM05D000291 ORTHO05D001358 8.6e-06 53.9 57 49.1


User provided reference genes

Program Settings