Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g038390.1 Solanum lycopersicum HOM05D003559 ORTHO05D003896 3.6e-39 164.5 83 100.0
Sopen12g018530 Solanum pennellii HOM05D003559 ORTHO05D003896 5.3e-35 150.6 81 92.6
PGSC0003DMG400023065 Solanum tuberosum HOM05D003559 ORTHO05D003896 7.7e-34 146.7 80 90.0
Solyc06g069310.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 9.7e-29 129.8 80 82.5
Sopen06g026570 Solanum pennellii HOM05D003559 ORTHO05D003896 9.7e-29 129.8 80 82.5
PGSC0003DMG400004076 Solanum tuberosum HOM05D003559 ORTHO05D003896 9.7e-29 129.8 80 82.5
Nitab4.5_0001432g0150 Nicotiana tabacum HOM05D000436 ORTHO05D003896 5.3e-27 124.0 73 84.9
CAN.G587.71 Capsicum annuum HOM05D003559 ORTHO05D003896 7.0e-27 123.6 80 78.8
Nitab4.5_0005020g0040 Nicotiana tabacum HOM05D000436 ORTHO05D003896 7.7e-26 120.2 72 83.3
Nitab4.5_0006132g0010 Nicotiana tabacum HOM05D000436 ORTHO05D003896 1.7e-25 119.0 71 81.7
Peaxi162Scf00017g03040 Petunia axillaris HOM05D003559 ORTHO05D003896 8.5e-25 116.7 75 76.0
Peaxi162Scf00013g00829 Petunia axillaris HOM05D003559 ORTHO05D003896 1.1e-24 116.3 72 79.2
Peaxi162Scf00119g00126 Petunia axillaris HOM05D003559 ORTHO05D003896 1.5e-24 115.9 77 75.3
Nitab4.5_0000208g0120 Nicotiana tabacum HOM05D000436 ORTHO05D003896 2.5e-24 115.2 68 82.4
CAN.G781.4 Capsicum annuum HOM05D003559 ORTHO05D003896 4.2e-24 114.4 79 74.7
Cc04_g07710 Coffea canephora HOM05D003559 ORTHO05D003896 5.5e-24 114.0 83 73.5
RhsimUnG0225600 Rhododendron simsii HOM05D003559 ORTHO05D003896 5.5e-24 114.0 72 80.6
Oeu001006.1 Olea europaea HOM05D003559 ORTHO05D003896 7.2e-24 113.6 70 81.4
CSS0003476 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 9.4e-24 113.2 72 80.6
CSS0029845 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 9.4e-24 113.2 72 80.6
PGSC0003DMG401024603 Solanum tuberosum HOM05D003559 ORTHO05D003896 9.4e-24 113.2 79 74.7
vmacro12201 Vaccinium macrocarpon HOM05D003559 ORTHO05D003896 1.2e-23 112.8 72 79.2
Hma1.2p1_0340F.1_g130100 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 3.6e-23 111.3 70 80.0
Solyc03g114400.3 Solanum lycopersicum HOM05D003559 ORTHO05D003896 6.1e-23 110.5 79 72.2
Sopen03g033500 Solanum pennellii HOM05D003559 ORTHO05D003896 6.1e-23 110.5 79 72.2
Oeu008246.1 Olea europaea HOM05D003559 ORTHO05D003896 8.0e-23 110.2 70 78.6
Dinv38604 Davidia involucrata HOM05D003559 ORTHO05D003896 1.0e-22 109.8 76 76.3
HanXRQChr16g0502041 Helianthus annuus HOM05D003559 ORTHO05D003896 1.4e-22 109.4 76 75.0
Migut.D01587 Erythranthe guttata HOM05D003559 ORTHO05D003896 4.0e-22 107.8 72 77.8
Lj9A433T100 Lonicera japonica HOM05D003559 ORTHO05D003896 4.0e-22 107.8 72 75.0
MSTRG.9000 Avicennia marina HOM05D003559 ORTHO05D003896 5.2e-22 107.5 65 83.1
Lsat_1_v5_gn_1_15700 Lactuca sativa HOM05D003559 ORTHO05D003896 5.2e-22 107.5 84 70.2
Lsat_1_v5_gn_4_111820 Lactuca sativa HOM05D003559 ORTHO05D003896 5.2e-22 107.5 81 70.4
Actinidia18952 Actinidia chinensis HOM05D003559 ORTHO05D003896 6.7e-22 107.1 72 77.8
GSVIVG01008215001 Vitis vinifera HOM05D003559 ORTHO05D003896 6.7e-22 107.1 80 71.2
Lj4g0027798 Lotus japonicus HOM05D003559 ORTHO05D003896 8.8e-22 106.7 81 72.8
SGA_v2.0_scaffold33G13364 Striga asiatica HOM05D003559 ORTHO05D003896 8.8e-22 106.7 80 71.2
VMungo1215G3031 Vigna mungo HOM05D003559 ORTHO05D003896 1.1e-21 106.3 80 72.5
Ca_02523_v3 Cicer arietinum L. HOM05D003559 ORTHO05D003896 2.0e-21 105.5 80 72.5
CiPaw.16G082800 Carya illinoinensis HOM05D003559 ORTHO05D003896 3.3e-21 104.8 72 73.6
Ciclev10022641m.g Citrus clementina HOM05D003559 ORTHO05D003896 3.3e-21 104.8 71 76.1
Duzib205G0101 Durio zibethinus HOM05D003559 ORTHO05D003896 3.3e-21 104.8 71 74.6
PGR083G0538 Punica granatum HOM05D003559 ORTHO05D003896 3.3e-21 104.8 72 73.6
Cpa.g.sc13.75 Carica papaya HOM05D003559 ORTHO05D003896 4.4e-21 104.4 73 78.1
Medtr4g112380 Medicago truncatula HOM05D003559 ORTHO05D003896 4.4e-21 104.4 77 75.3
Nitab4.5_0000646g0080 Nicotiana tabacum HOM05D000436 ORTHO05D003896 4.4e-21 104.4 60 85.0
HanXRQChr04g0109851 Helianthus annuus HOM05D003559 ORTHO05D003896 5.7e-21 104.0 74 71.6
HanXRQChr09g0269861 Helianthus annuus HOM05D003559 ORTHO05D003896 5.7e-21 104.0 81 67.9
Phvul.003G179300 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 5.7e-21 104.0 81 72.8
TWI81G0966 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 5.7e-21 104.0 73 75.3
ATR0815G014 Amborella trichopoda HOM05D003559 ORTHO05D003896 9.7e-21 103.2 72 75.0
Lalb_Chr08g0235361 Lupinus albus HOM05D003559 ORTHO05D003896 9.7e-21 103.2 70 74.3
Hund19381 Selenicereus undatus HOM05D003559 ORTHO05D003896 9.7e-21 103.2 73 75.3
Gohir.A09G244200 Gossypium hirsutum HOM05D003559 ORTHO05D003896 1.3e-20 102.8 73 72.6
Gohir.D09G245100 Gossypium hirsutum HOM05D003559 ORTHO05D003896 1.3e-20 102.8 73 72.6
Gorai.006G269400 Gossypium raimondii HOM05D003559 ORTHO05D003896 1.3e-20 102.8 73 72.6
Lalb_Chr07g0178501 Lupinus albus HOM05D003559 ORTHO05D003896 1.3e-20 102.8 81 71.6
Manes.01G022100 Manihot esculenta HOM05D003559 ORTHO05D003896 1.3e-20 102.8 73 75.3
Atru.chr9.708 Acer truncatum HOM05D003559 ORTHO05D003896 1.7e-20 102.4 71 74.6
Aqoxy3G03860 Aquilegia oxysepala HOM05D003559 ORTHO05D003896 1.7e-20 102.4 74 70.3
Duzib068G0274 Durio zibethinus HOM05D003559 ORTHO05D003896 1.7e-20 102.4 73 74.0
TAR371G0504 Trochodendron aralioides HOM05D003559 ORTHO05D003896 1.7e-20 102.4 72 76.4
CANSAT80G0220 Cannabis sativa HOM05D003559 ORTHO05D003896 2.2e-20 102.1 80 73.8
Glyma.17G123600 Glycine max HOM05D003559 ORTHO05D003896 2.2e-20 102.1 84 70.2
PSO017G5533 Papaver somniferum HOM05D003559 ORTHO05D003896 2.2e-20 102.1 72 75.0
PSO063G2115 Papaver somniferum HOM05D003559 ORTHO05D003896 2.2e-20 102.1 72 75.0
CSS0016530 Camellia sinensis var. sinensis HOM05D003559 ORTHO05D003896 2.8e-20 101.7 73 75.3
Lj5A141T87 Lonicera japonica HOM05D003559 ORTHO05D003896 2.8e-20 101.7 73 75.3
QL10p022343 Quercus lobata HOM05D003559 ORTHO05D003896 2.8e-20 101.7 80 71.2
arahy.Tifrunner.gnm1.ann1.B1KVMA Arachis hypogaea HOM05D003559 ORTHO05D003896 3.7e-20 101.3 81 71.6
Cfa019843 Carpinus fangiana HOM05D003559 ORTHO05D003896 3.7e-20 101.3 73 74.0
Haze_18574 Corylus avellana HOM05D003559 ORTHO05D003896 3.7e-20 101.3 73 74.0
Manes.05G117400 Manihot esculenta HOM05D003559 ORTHO05D003896 3.7e-20 101.3 73 74.0
Sp2g24030 Schrenkiella parvula HOM05D003559 ORTHO05D003896 3.7e-20 101.3 75 69.3
TAR622G1039 Trochodendron aralioides HOM05D003559 ORTHO05D003896 3.7e-20 101.3 72 76.4
TAR702G0002 Trochodendron aralioides HOM05D003559 ORTHO05D003896 3.7e-20 101.3 72 76.4
COL.COLO4_32191 Corchorus olitorius HOM05D003559 ORTHO05D003896 4.8e-20 100.9 81 70.4
Lalb_Chr13g0302501 Lupinus albus HOM05D003559 ORTHO05D003896 4.8e-20 100.9 81 67.9
Lalb_Chr23g0274121 Lupinus albus HOM05D003559 ORTHO05D003896 4.8e-20 100.9 78 71.8
Hund03255 Selenicereus undatus HOM05D003559 ORTHO05D003896 4.8e-20 100.9 76 72.4
Thecc.03G115000 Theobroma cacao HOM05D003559 ORTHO05D003896 6.3e-20 100.5 73 72.6
Gohir.D07G061000 Gossypium hirsutum HOM05D003559 ORTHO05D003896 8.2e-20 100.1 73 72.6
Gorai.001G064700 Gossypium raimondii HOM05D003559 ORTHO05D003896 8.2e-20 100.1 73 72.6
ECA232G4761 Erigeron canadensis HOM05D003559 ORTHO05D003896 1.4e-19 99.4 76 69.7
Glyma.05G015100 Glycine max HOM05D003559 ORTHO05D003896 1.4e-19 99.4 82 72.0
Lj1g0005945 Lotus japonicus HOM05D003559 ORTHO05D003896 1.4e-19 99.4 72 75.0
SEGI_05393 Sequoiadendron giganteum HOM05D003559 ORTHO05D003896 1.4e-19 99.4 72 68.1
TPR.G2820 Trifolium pratense HOM05D003559 ORTHO05D003896 1.4e-19 99.4 81 71.6
Actinidia31038 Actinidia chinensis HOM05D000436 ORTHO05D003896 1.8e-19 99.0 80 67.5
DCAR_023145 Daucus carota HOM05D003559 ORTHO05D003896 1.8e-19 99.0 72 70.8
HanXRQChr09g0269851 Helianthus annuus HOM05D003559 ORTHO05D003896 1.8e-19 99.0 60 80.0
Nn3g17669 Nelumbo nucifera HOM05D003559 ORTHO05D003896 1.8e-19 99.0 80 67.5
Medtr2g056000 Medicago truncatula HOM05D003559 ORTHO05D003896 2.4e-19 98.6 80 68.8
Psat1g027000 Pisum sativum HOM05D003559 ORTHO05D003896 2.4e-19 98.6 80 68.8
THA.LOC104800935 Tarenaya hassleriana HOM05D003559 ORTHO05D003896 2.4e-19 98.6 76 69.7
BcaB04g19888 Brassica carinata HOM05D003559 ORTHO05D003896 3.1e-19 98.2 87 63.2
Potri.015G052800 Populus trichocarpa HOM05D003559 ORTHO05D003896 3.1e-19 98.2 81 70.4
Sabra15G0077200 Salix brachista HOM05D003559 ORTHO05D003896 3.1e-19 98.2 72 73.6
ClCG06G015130 Citrullus lanatus HOM05D003559 ORTHO05D003896 4.1e-19 97.8 73 74.0
Sed0008282 Sechium edule HOM05D003559 ORTHO05D003896 4.1e-19 97.8 73 74.0
VMungo1309G2871 Vigna mungo HOM05D003559 ORTHO05D003896 4.1e-19 97.8 80 71.2
BcaC04g23480 Brassica carinata HOM05D003559 ORTHO05D003896 5.3e-19 97.4 69 72.5
A09p07060 Brassica napus HOM05D003559 ORTHO05D003896 5.3e-19 97.4 69 72.5
C09p07910 Brassica napus HOM05D003559 ORTHO05D003896 5.3e-19 97.4 69 72.5
BolC9t53704H Brassica oleracea HOM05D003559 ORTHO05D003896 5.3e-19 97.4 69 72.5
BraA09t36354Z Brassica rapa HOM05D003559 ORTHO05D003896 5.3e-19 97.4 69 72.5
Glyma.04G145000 Glycine max HOM05D003559 ORTHO05D003896 5.3e-19 97.4 71 74.6
Sc09g0007430 Simmondsia chinensis HOM05D003559 ORTHO05D003896 7.0e-19 97.1 74 75.7
AT5G08190 Arabidopsis thaliana HOM05D003559 ORTHO05D003896 9.1e-19 96.7 76 67.1
Carub.0006s2088 Capsella rubella HOM05D003559 ORTHO05D003896 9.1e-19 96.7 76 67.1
FAN08G2954 Fragaria x ananassa HOM05D003559 ORTHO05D003896 9.1e-19 96.7 83 67.5
Glyma.06G209000 Glycine max HOM05D003559 ORTHO05D003896 9.1e-19 96.7 80 70.0
RcHm_v2.0_Chr7g0184331 Rosa chinensis HOM05D003559 ORTHO05D003896 9.1e-19 96.7 81 69.1
unitig_21.g20428 Utricularia gibba HOM05D003559 ORTHO05D003896 9.1e-19 96.7 81 61.7
MBI16_g06573_MAGBIO Magnolia biondii HOM05D003559 ORTHO05D003896 1.2e-18 96.3 72 72.2
Phvul.009G201500 Phaseolus vulgaris HOM05D003559 ORTHO05D003896 1.2e-18 96.3 80 70.0
Prupe.5G214400 Prunus persica HOM05D003559 ORTHO05D003896 1.2e-18 96.3 73 72.6
SGA_v2.0_scaffold33G13365 Striga asiatica HOM05D003559 ORTHO05D003896 1.2e-18 96.3 58 84.5
TWI60G0348 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 1.2e-18 96.3 70 74.3
Aa31LG11G2580 Aethionema arabicum HOM05D003559 ORTHO05D003896 1.6e-18 95.9 78 70.5
AL6G18600 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 1.6e-18 95.9 76 65.8
AL6G34280 Arabidopsis lyrata HOM05D003559 ORTHO05D003896 1.6e-18 95.9 77 70.1
BcaB08g37276 Brassica carinata HOM05D003559 ORTHO05D003896 1.6e-18 95.9 73 69.9
CARHR190440 Cardamine hirsuta HOM05D003559 ORTHO05D003896 1.6e-18 95.9 77 70.1
Thhalv10014894m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 1.6e-18 95.9 76 65.8
Carub.0006s0709 Capsella rubella HOM05D003559 ORTHO05D003896 2.0e-18 95.5 76 65.8
MELO3C017276.2 Cucumis melo HOM05D003559 ORTHO05D003896 2.0e-18 95.5 77 68.8
FvH4_5g12901 Fragaria vesca HOM05D003559 ORTHO05D003896 2.0e-18 95.5 81 67.9
FAN13G1448 Fragaria x ananassa HOM05D003559 ORTHO05D003896 2.0e-18 95.5 81 67.9
FAN18G1277 Fragaria x ananassa HOM05D003559 ORTHO05D003896 2.0e-18 95.5 81 67.9
Nn4g23671 Nelumbo nucifera HOM05D003559 ORTHO05D003896 2.0e-18 95.5 80 66.2
Thhalv10005056m.g Eutrema salsugineum HOM05D003559 ORTHO05D003896 2.7e-18 95.1 77 70.1
unitig_744.g24408 Utricularia gibba HOM05D003559 ORTHO05D003896 2.7e-18 95.1 81 61.7
AT5G23090 Arabidopsis thaliana HOM05D003559 ORTHO05D003896 3.5e-18 94.7 77 70.1
Ca_02637_v3 Cicer arietinum L. HOM05D000436 ORTHO05D003896 3.5e-18 94.7 72 69.4
Hma1.2p1_0595F.1_g186080 Hydrangea macrophylla HOM05D003559 ORTHO05D003896 3.5e-18 94.7 103 55.3
MD06G1209300 Malus domestica HOM05D003559 ORTHO05D003896 3.5e-18 94.7 73 71.2
TWI15G0382 Tripterygium wilfordii HOM05D003559 ORTHO05D003896 3.5e-18 94.7 74 71.6
CARHR204990 Cardamine hirsuta HOM05D003559 ORTHO05D003896 4.5e-18 94.4 71 70.4
Sp6g34750 Schrenkiella parvula HOM05D003559 ORTHO05D003896 4.5e-18 94.4 71 70.4
vmacro17645 Vaccinium macrocarpon HOM05D003559 ORTHO05D003896 4.5e-18 94.4 93 58.1
Aqoxy3G00433 Aquilegia oxysepala HOM05D003559 ORTHO05D003896 5.9e-18 94.0 72 70.8
Eucgr.B00669 Eucalyptus grandis HOM05D003559 ORTHO05D003896 5.9e-18 94.0 81 66.7
Sed0024201 Sechium edule HOM05D003559 ORTHO05D003896 5.9e-18 94.0 74 67.6
MBI10_g18305_MAGBIO Magnolia biondii HOM05D003559 ORTHO05D003896 7.7e-18 93.6 82 65.9
MD14G1219800 Malus domestica HOM05D003559 ORTHO05D003896 7.7e-18 93.6 73 71.2
TPR.G20734 Trifolium pratense HOM05D000436 ORTHO05D003896 7.7e-18 93.6 78 69.2
EL10Ac2g03673 Beta vulgaris HOM05D003559 ORTHO05D003896 1.0e-17 93.2 72 70.8
Sabra12G0041700 Salix brachista HOM05D003559 ORTHO05D003896 1.0e-17 93.2 81 66.7
Ah.11g044090 Amaranthus hybridus HOM05D003559 ORTHO05D003896 1.7e-17 92.4 79 65.8
BcaC03g13209 Brassica carinata HOM05D003559 ORTHO05D003896 2.2e-17 92.0 66 72.7
CsaV3_1G003510 Cucumis sativus L. HOM05D003559 ORTHO05D003896 2.9e-17 91.7 85 62.4
ECA247G3802 Erigeron canadensis HOM05D003559 ORTHO05D003896 2.9e-17 91.7 73 68.5
BraA02t04945Z Brassica rapa HOM05D003559 ORTHO05D003896 5.0e-17 90.9 81 61.7
Sc23g0004420 Simmondsia chinensis HOM05D003559 ORTHO05D003896 6.5e-17 90.5 70 71.4
Oeu031816.1 Olea europaea HOM05D003559 ORTHO05D003896 8.5e-17 90.1 80 65.0
Aa31LG3G18350 Aethionema arabicum HOM05D003559 ORTHO05D003896 1.1e-16 89.7 80 61.2
BcaC03g13210 Brassica carinata HOM05D003559 ORTHO05D003896 1.1e-16 89.7 80 62.5
C02p03450 Brassica napus HOM05D003559 ORTHO05D003896 1.1e-16 89.7 80 62.5
Zm00001eb178500 Zea mays HOM05D003559 ORTHO05D003896 1.1e-16 89.7 73 65.8
CDE04G0696 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 1.9e-16 89.0 66 74.2
AUR62028068 Chenopodium quinoa HOM05D003559 ORTHO05D003896 1.2e-15 86.3 86 57.0
Potri.012G058200 Populus trichocarpa HOM05D003559 ORTHO05D003896 3.6e-15 84.7 82 64.6
Zm00001eb042490 Zea mays HOM05D003559 ORTHO05D003896 3.6e-15 84.7 70 64.3
AUR62044392 Chenopodium quinoa HOM05D003559 ORTHO05D003896 6.1e-15 84.0 84 57.1
CDE06G1451 Ceratophyllum demersum HOM05D003559 ORTHO05D003896 1.8e-14 82.4 68 69.1
SEGI_10246 Sequoiadendron giganteum HOM05D003559 ORTHO05D003896 1.8e-14 82.4 71 60.6
THA.LOC104819383 Tarenaya hassleriana HOM05D003559 ORTHO05D003896 5.2e-14 80.9 72 65.3
Os08g0383700 Oryza sativa ssp. japonica HOM05D003559 ORTHO05D003896 1.2e-13 79.7 75 58.7
AUR62020662 Chenopodium quinoa HOM05D003559 ORTHO05D003896 5.7e-13 77.4 69 62.3
A10p28480 Brassica napus HOM05D003559 ORTHO05D003896 9.8e-13 76.6 56 73.2
C09p68750 Brassica napus HOM05D003559 ORTHO05D003896 9.8e-13 76.6 56 73.2
BolC9t59622H Brassica oleracea HOM05D003559 ORTHO05D003896 9.8e-13 76.6 56 73.2
BraA10t44896Z Brassica rapa HOM05D003559 ORTHO05D003896 9.8e-13 76.6 56 73.2
Duzib084G1140 Durio zibethinus HOM05D003559 ORTHO05D003896 2.2e-12 75.5 72 61.1
SEGI_30683 Sequoiadendron giganteum HOM05D003559 ORTHO05D003896 2.2e-12 75.5 74 56.8
SMO353G0032 Selaginella moellendorffii HOM05D003559 ORTHO05D003896 2.8e-12 75.1 66 65.2
Mapoly0053s0055 Marchantia polymorpha HOM05D003559 ORTHO05D003896 1.1e-11 73.2 82 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2062 Anthoceros agrestis HOM05D003559 ORTHO05D003896 4.1e-11 71.2 76 56.6
BcaB01g05623 Brassica carinata HOM05D003559 ORTHO05D003896 5.4e-11 70.9 55 72.7
BolC3t12948H Brassica oleracea HOM05D003559 ORTHO05D003896 5.4e-11 70.9 55 72.7
HanXRQChr08g0228481 Helianthus annuus HOM05D003559 ORTHO05D003896 5.4e-11 70.9 46 80.4
Gohir.A07G056700 Gossypium hirsutum HOM05D003559 ORTHO05D003896 5.0e-09 64.3 48 70.8
Pp3c10_17500 Physcomitrium patens HOM05D003559 ORTHO05D003896 5.0e-09 64.3 72 51.4
CBR_g40782 Chara braunii HOM05D003559 ORTHO05D003896 8.5e-09 63.5 58 55.2
HPP92_003792 Vanilla planifolia HOM05D003559 ORTHO05D003896 6.8e-06 53.9 37 62.2


User provided reference genes

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