Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035980.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.3e-33 144.1 72 100.0
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 1.7e-21 105.5 59 88.1
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 6.5e-21 103.6 59 86.4
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.5e-20 101.7 59 84.7
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 9.3e-20 99.8 59 83.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 9.3e-20 99.8 59 83.1
Solyc03g078010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-19 99.0 56 85.7
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 2.1e-19 98.6 59 81.4
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.1e-19 98.6 59 83.1
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 3.5e-19 97.8 58 82.8
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 3.5e-19 97.8 58 82.8
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 3.5e-19 97.8 58 82.8
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 3.5e-19 97.8 58 82.8
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.5e-19 97.8 59 83.1
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.5e-19 97.8 59 81.4
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.5e-19 97.8 59 81.4
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 6.1e-19 97.1 59 81.4
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 6.1e-19 97.1 59 81.4
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 7.9e-19 96.7 59 79.7
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 7.9e-19 96.7 59 79.7
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 7.9e-19 96.7 59 79.7
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.0e-18 96.3 59 81.4
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.3e-18 95.9 58 82.8
RcHm_v2.0_Chr2g0118451 Rosa chinensis HOM05D000445 ORTHO05D000314 1.8e-18 95.5 59 81.4
Lj2C1239G59 Lonicera japonica HOM05D000445 ORTHO05D000314 2.3e-18 95.1 60 83.3
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 3.0e-18 94.7 59 83.1
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 5.1e-18 94.0 53 86.8
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 6.7e-18 93.6 58 79.3
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 6.7e-18 93.6 58 82.8
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 8.7e-18 93.2 59 78.0
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 8.7e-18 93.2 59 83.1
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-17 92.4 60 76.7
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 1.5e-17 92.4 59 79.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.3e-17 91.3 59 81.4
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.3e-17 91.3 59 81.4
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.3e-17 91.3 58 75.9
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.3e-17 91.3 58 75.9
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 7.4e-17 90.1 60 76.7
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 90.1 59 76.3
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 90.1 59 76.3
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 7.4e-17 90.1 59 76.3
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 64 71.9
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-17 89.7 59 76.3
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.3e-16 89.4 59 79.7
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.3e-16 89.4 59 79.7
CAN.G1648.15 Capsicum annuum HOM05D000445 ORTHO05D000314 2.2e-16 88.6 59 76.3
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 2.8e-16 88.2 59 78.0
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-16 88.2 59 74.6
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-16 88.2 59 74.6
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 3.7e-16 87.8 79 63.3
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 6.3e-16 87.0 61 77.0
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 6.3e-16 87.0 61 77.0
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 6.3e-16 87.0 61 77.0
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 8.2e-16 86.7 61 77.0
Solyc12g035780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-15 86.3 58 75.9
Nitab4.5_0000011g0360 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 59 74.6
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.8e-15 85.5 59 78.0
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
BolSC47t61073H Brassica oleracea HOM05D000445 ORTHO05D000314 2.4e-15 85.1 61 75.4
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 2.4e-15 85.1 60 73.3
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 2.4e-15 85.1 60 73.3
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 2.4e-15 85.1 60 73.3
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.3e-15 84.0 48 83.3
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-14 82.8 60 71.7
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 5.9e-14 80.5 61 73.8
Lju5009C0G1 Lonicera japonica HOM05D000445 ORTHO05D000314 1.7e-13 79.0 55 76.4
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 3.8e-13 77.8 88 53.4
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 6.5e-13 77.0 69 63.8
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-12 75.9 61 72.1
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.4e-12 75.9 61 72.1
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.4e-12 75.9 61 72.1
Nitab4.5_0009685g0030 Nicotiana tabacum HOM05D003033 ORTHO05D003475 3.2e-12 74.7 47 76.6
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 5.5e-12 73.9 53 71.7
Nitab4.5_0001761g0320 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.2e-12 73.6 41 85.4
Nn020s41481 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.0e-10 69.7 47 78.7
CAN.G1738.15 Capsicum annuum HOM05D000445 ORTHO05D000314 3.0e-10 68.2 37 86.5
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.0e-10 68.2 45 77.8
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-09 65.9 71 54.9
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 7.4e-09 63.5 62 59.7
Nitab4.5_0023562g0010 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.7e-09 63.2 44 70.5
Nitab4.5_0000496g0040 Nicotiana tabacum HOM05D000580 ORTHO05D001785 2.4e-07 58.5 40 70.0
CAN.G8.28 Capsicum annuum HOM05D000445 ORTHO05D000314 6.9e-07 57.0 29 86.2
Solyc04g050850.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-06 55.1 32 87.5
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.4e-06 54.7 32 87.5
Solyc02g011940.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.9e-06 53.9 32 84.4
Solyc03g120370.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.7e-06 53.5 32 84.4


User provided reference genes

Program Settings