Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035970.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-39 164.9 80 100.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.7e-25 119.0 66 84.8
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.7e-25 117.9 66 83.3
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.4e-24 115.2 73 78.1
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.4e-24 115.2 73 78.1
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.9e-24 113.6 79 72.2
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 1.2e-23 112.8 71 78.9
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-23 112.8 66 81.8
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.5e-23 112.5 73 75.3
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-23 112.5 73 75.3
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-23 112.5 73 75.3
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.5e-23 112.5 73 75.3
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-23 112.1 66 83.3
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 3.4e-23 111.3 71 77.5
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.9e-23 110.5 66 81.8
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 5.9e-23 110.5 71 77.5
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 5.9e-23 110.5 71 77.5
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 5.9e-23 110.5 71 77.5
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.0e-22 109.8 71 76.1
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.0e-22 109.8 71 76.1
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.0e-22 109.8 66 81.8
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.7e-22 109.0 65 81.5
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.7e-22 109.0 71 76.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.7e-22 109.0 71 76.1
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 2.2e-22 108.6 73 74.0
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 2.2e-22 108.6 68 77.9
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 2.9e-22 108.2 71 76.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 2.9e-22 108.2 71 76.1
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 3.8e-22 107.8 71 74.6
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 3.8e-22 107.8 71 74.6
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 3.8e-22 107.8 71 74.6
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 3.8e-22 107.8 71 74.6
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 3.8e-22 107.8 71 74.6
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 5.0e-22 107.5 71 74.6
Nitab4.5_0022403g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.0e-22 107.5 68 77.9
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-21 105.9 79 70.9
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-21 105.9 66 78.8
Nn1g06697 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.9e-21 105.5 63 81.0
Nitab4.5_0014666g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.5e-21 105.1 66 77.3
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 2.5e-21 105.1 71 74.6
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.2e-21 104.8 73 69.9
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-21 104.4 71 73.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-21 104.4 71 73.2
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 4.2e-21 104.4 71 73.2
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 5.5e-21 104.0 79 64.6
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 5.5e-21 104.0 79 64.6
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 7.2e-21 103.6 65 78.5
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 7.2e-21 103.6 65 78.5
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 1.2e-20 102.8 73 69.9
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 1.2e-20 102.8 73 69.9
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 1.6e-20 102.4 70 71.4
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-20 102.4 63 82.5
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 79 65.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 79 65.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 79 65.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 79 65.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 79 65.8
Lalb_Chr13g0292591 Lupinus albus HOM05D000445 ORTHO05D000314 2.7e-20 101.7 66 74.2
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.6e-20 101.3 68 73.5
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.6e-20 101.3 68 73.5
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 7.9e-20 100.1 73 69.9
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 7.9e-20 100.1 68 73.5
Gorai.002G197300 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.0e-19 99.8 71 71.8
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-19 98.6 73 68.5
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 3.0e-19 98.2 79 64.6
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 3.0e-19 98.2 79 64.6
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 3.9e-19 97.8 70 70.0
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.7e-19 97.1 79 63.3
Gohir.D01G159050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-18 95.9 71 70.4
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.0e-18 95.5 76 64.5
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 2.6e-18 95.1 66 72.7
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.4e-18 94.4 73 68.5
TAR629G3257 Trochodendron aralioides HOM05D000445 ORTHO05D000314 4.4e-18 94.4 58 79.3
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-18 93.2 71 69.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-18 93.2 71 69.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 9.7e-18 93.2 71 69.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-17 92.8 71 67.6
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-17 92.8 66 72.7
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-17 92.8 71 67.6
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 1.3e-17 92.8 71 67.6
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-17 92.8 68 70.6
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 3.7e-17 91.3 66 69.7
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 6.3e-17 90.5 65 72.3
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 6.3e-17 90.5 65 72.3
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.3e-17 90.5 65 72.3
MD15G1134100 Malus domestica HOM05D003414 ORTHO05D003913 6.3e-17 90.5 54 79.6
Nn3g21393 Nelumbo nucifera HOM05D000445 ORTHO05D000314 8.2e-17 90.1 56 78.6
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.2e-17 90.1 57 71.9
HanXRQChr00c0126g0571771 Helianthus annuus HOM05D000445 ORTHO05D000314 4.1e-16 87.8 65 69.2
Medtr1g102200 Medicago truncatula HOM05D000445 ORTHO05D000314 5.3e-16 87.4 68 66.2
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 5.3e-16 87.4 68 66.2
CARHR292730 Cardamine hirsuta HOM05D000445 ORTHO05D000314 9.1e-16 86.7 56 76.8
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 9.1e-16 86.7 66 66.7
Nitab4.5_0004376g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.1e-16 86.7 57 77.2
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 2.6e-15 85.1 68 64.7
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 9.4e-13 76.6 58 67.2
Nitab4.5_0001761g0240 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.1e-12 73.9 50 74.0
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 1.0e-11 73.2 52 71.2
BolSC49t61211H Brassica oleracea HOM05D000445 ORTHO05D000314 1.4e-11 72.8 51 72.5
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 5.7e-10 67.4 69 53.6
BolSC47t61072H Brassica oleracea HOM05D000445 ORTHO05D000314 7.5e-10 67.0 44 75.0
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 6.3e-09 63.9 50 66.0
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 6.3e-09 63.9 50 66.0
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 8.2e-09 63.5 66 53.0
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.1e-08 61.6 36 86.1
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 3.1e-08 61.6 79 48.1
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 3.1e-08 61.6 79 48.1
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.0e-07 58.9 44 65.9
Gorai.009G069400 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.5e-07 58.2 38 68.4
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.3e-06 56.2 30 83.3
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.3e-06 56.2 38 65.8
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 1.3e-06 56.2 56 55.4
Psat0s2261g0120 Pisum sativum HOM05D000012 ORTHO05D000804 1.7e-06 55.8 53 58.5


User provided reference genes

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