Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-21 104.4 50 100.0
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-15 83.6 49 81.6
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-14 79.7 49 79.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-14 79.7 49 79.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-14 79.7 49 79.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 9.1e-14 79.3 49 77.6
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.0e-13 78.2 49 77.6
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-13 77.8 49 77.6
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 3.4e-13 77.4 49 77.6
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 3.4e-13 77.4 49 77.6
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.4e-13 77.4 49 77.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 4.5e-13 77.0 49 75.5
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 7.7e-13 76.3 49 75.5
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-12 75.9 49 75.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-12 75.5 48 77.1
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.9e-12 74.3 49 73.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.9e-12 74.3 49 73.5
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.8e-12 73.9 49 73.5
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 5.0e-12 73.6 49 73.5
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 5.0e-12 73.6 49 73.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 5.0e-12 73.6 49 71.4
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 6.5e-12 73.2 49 73.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.5e-12 73.2 49 75.5
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.5e-12 73.2 49 75.5
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.5e-12 73.2 49 73.5
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-11 72.4 49 71.4
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-11 72.4 49 71.4
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-11 72.4 49 71.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.9e-11 71.6 49 73.5
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.2e-11 70.9 49 73.5
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.2e-11 70.9 49 73.5
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 3.2e-11 70.9 49 69.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 4.2e-11 70.5 49 71.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 7.2e-11 69.7 49 71.4
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 7.2e-11 69.7 49 71.4
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.2e-11 69.7 49 71.4
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 7.2e-11 69.7 49 71.4
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 9.4e-11 69.3 49 71.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.6e-10 68.6 49 69.4
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.1e-10 68.2 49 69.4
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.1e-10 68.2 49 71.4
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 2.1e-10 68.2 49 71.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 2.1e-10 68.2 49 69.4
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 2.1e-10 68.2 49 71.4
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.7e-10 67.8 48 68.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.6e-10 67.4 49 69.4
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.7e-10 67.0 49 69.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 6.1e-10 66.6 49 67.3
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 49 67.3
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 49 67.3
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 49 67.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 49 67.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 44 75.0
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.1e-10 66.6 44 75.0
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 7.9e-10 66.2 46 71.7
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.9e-10 66.2 49 65.3
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 5.1e-09 63.5 49 63.3
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.5e-08 62.0 49 67.3
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-08 61.2 49 63.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.3e-08 60.8 49 63.3
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.3e-08 60.8 45 68.9
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 6.3e-07 56.6 35 77.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 8.2e-07 56.2 49 57.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 4.1e-06 53.9 38 68.4
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 7.0e-06 53.1 36 72.2


User provided reference genes

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