Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.3e-138 495.0 237 100.0
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.9e-19 98.2 128 46.9
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.9e-16 90.5 145 40.0
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.9e-16 90.5 145 40.0
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.9e-16 90.5 145 40.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-16 89.7 146 40.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-16 89.7 146 40.4
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-16 89.7 146 40.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.2e-16 89.7 146 40.4
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 5.4e-16 89.0 146 40.4
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 5.4e-16 89.0 146 40.4
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.1e-16 88.6 140 40.7
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 9.3e-16 88.2 146 39.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 9.3e-16 88.2 146 39.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 9.3e-16 88.2 146 39.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-15 87.8 146 39.7
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.6e-15 87.4 144 39.6
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-15 87.0 145 37.9
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.1e-15 87.0 145 37.9
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.7e-15 86.7 146 40.4
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.7e-15 86.7 132 43.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 7.8e-15 85.1 146 37.7
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.7e-14 84.0 145 37.9
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.3e-14 83.6 143 39.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 5.1e-14 82.4 142 38.7
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 6.6e-14 82.0 146 37.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 8.7e-14 81.6 147 38.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.1e-13 81.3 143 37.8
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.9e-13 80.5 142 38.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.5e-13 80.1 146 37.0
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.5e-13 80.1 146 37.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.5e-13 80.1 146 37.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.5e-13 80.1 146 37.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 2.5e-13 80.1 142 38.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 3.3e-13 79.7 139 38.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.3e-13 79.3 146 36.3
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 4.3e-13 79.3 142 38.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 5.6e-13 79.0 141 38.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.6e-13 79.0 141 38.3
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.6e-13 79.0 142 38.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 7.3e-13 78.6 139 38.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 7.3e-13 78.6 139 38.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 7.3e-13 78.6 139 38.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 7.3e-13 78.6 139 38.1
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.3e-12 77.8 146 37.0
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.6e-12 77.4 136 38.2
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.8e-12 76.6 143 38.5
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.6e-12 76.3 144 37.5
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 3.6e-12 76.3 143 37.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.8e-12 75.9 140 35.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.8e-12 75.9 150 38.0
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 6.2e-12 75.5 142 35.9
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 3.1e-11 73.2 105 43.8
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-11 72.8 254 28.3
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-11 72.8 254 28.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 9.0e-11 71.6 44 72.7
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.5e-10 70.9 44 70.5
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.5e-10 70.9 44 70.5
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-10 70.9 146 36.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-10 70.5 149 34.9
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-10 70.1 135 36.3
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.6e-10 70.1 44 70.5
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 9.9e-10 68.2 45 66.7
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.7e-09 67.4 44 65.9
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.7e-09 67.4 44 70.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.9e-09 66.6 146 34.9
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.8e-09 66.2 132 35.6
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 8.4e-09 65.1 56 58.9
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.4e-08 64.3 40 72.5
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.9e-08 63.9 42 64.3
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.3e-08 61.6 44 61.4
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.3e-08 61.6 37 70.3
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.7e-07 60.1 135 34.8
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-07 59.7 39 69.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 3.5e-07 59.7 42 59.5
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 6.0e-07 58.9 39 66.7


User provided reference genes

Program Settings