Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 7.7e-46 186.8 95 100.0
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.6e-30 136.0 95 77.9
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 1.6e-30 136.0 95 77.9
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 2.0e-30 135.6 94 77.7
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.3e-29 132.9 95 75.8
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.3e-29 132.9 95 75.8
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 1.3e-29 132.9 95 75.8
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.1e-28 129.8 95 73.7
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 1.9e-28 129.0 95 75.8
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 2.5e-28 128.6 94 74.5
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 4.2e-28 127.9 95 72.6
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 9.4e-28 126.7 93 71.0
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 8.8e-26 120.2 87 74.7
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 4.7e-19 97.8 90 57.8
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 1.4e-18 96.3 87 60.9
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 1.4e-18 96.3 87 60.9
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 1.8e-18 95.9 92 58.7
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 3.0e-18 95.1 104 55.8
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 4.0e-18 94.7 92 55.4
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.0e-18 94.7 93 54.8
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 4.0e-18 94.7 87 57.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 5.2e-18 94.4 89 57.3
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 5.2e-18 94.4 87 57.5
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.2e-18 94.4 87 57.5
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.2e-18 94.4 87 57.5
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 6.8e-18 94.0 87 57.5
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 6.8e-18 94.0 93 58.1
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 8.8e-18 93.6 92 56.5
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 8.8e-18 93.6 93 55.9
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 8.8e-18 93.6 77 66.2
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 8.8e-18 93.6 93 58.1
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 1.2e-17 93.2 93 58.1
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 5.7e-17 90.9 95 54.7
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 2.2e-16 89.0 93 54.8
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 3.7e-16 88.2 80 58.8
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 3.7e-16 88.2 64 75.0
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 4.8e-16 87.8 95 52.6
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 6.3e-16 87.4 95 53.7
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 6.3e-16 87.4 95 52.6
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 8.3e-16 87.0 95 53.7
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 8.3e-16 87.0 85 58.8
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.1e-15 86.7 85 57.6
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 1.1e-15 86.7 95 51.6
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 1.4e-15 86.3 95 51.6
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.8e-15 85.9 66 69.7
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 2.4e-15 85.5 71 62.0
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 4.1e-15 84.7 71 62.0
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 4.1e-15 84.7 66 66.7
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 7.0e-15 84.0 77 59.7
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 7.0e-15 84.0 71 60.6
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 7.0e-15 84.0 71 60.6
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 7.0e-15 84.0 71 60.6
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 9.1e-15 83.6 77 59.7
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 9.1e-15 83.6 71 59.2
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.2e-14 83.2 74 60.8
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.2e-14 83.2 71 60.6
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.2e-14 83.2 71 60.6
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.2e-14 83.2 74 60.8
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 1.2e-14 83.2 85 56.5
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 1.2e-14 83.2 85 56.5
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.2e-14 83.2 71 60.6
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.2e-14 83.2 74 60.8
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.6e-14 82.8 78 56.4
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 1.6e-14 82.8 71 59.2
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 2.0e-14 82.4 77 58.4
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 2.0e-14 82.4 77 58.4
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 2.0e-14 82.4 71 60.6
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 2.0e-14 82.4 71 60.6
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 2.7e-14 82.0 78 56.4
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 4.5e-14 81.3 74 59.5
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 4.5e-14 81.3 77 58.4
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 4.5e-14 81.3 74 59.5
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 1.0e-13 80.1 88 51.1
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.0e-13 80.1 85 56.5
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 1.0e-13 80.1 65 69.2
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 6.5e-13 77.4 74 56.8
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 8.6e-13 77.0 65 64.6
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.9e-12 75.9 67 59.7
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.5e-12 75.5 83 53.0
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 3.2e-12 75.1 74 55.4
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 4.2e-12 74.7 77 55.8
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.4e-10 69.7 57 61.4
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-10 69.7 61 62.3
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 1.8e-10 69.3 85 50.6
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 4.0e-10 68.2 78 53.8
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 1.5e-09 66.2 64 56.2
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-09 66.2 54 61.1
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 1.5e-09 66.2 54 61.1
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 2.0e-09 65.9 54 63.0
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 2.0e-09 65.9 54 63.0
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 3.4e-09 65.1 54 61.1
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 4.4e-09 64.7 74 52.7
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 4.4e-09 64.7 54 63.0
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 4.4e-09 64.7 54 61.1
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 4.4e-09 64.7 54 63.0
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 5.7e-09 64.3 55 60.0
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 9.8e-09 63.5 63 57.1
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 9.8e-09 63.5 54 61.1
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 1.7e-08 62.8 54 59.3
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 2.8e-08 62.0 54 59.3
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 3.7e-08 61.6 51 62.7
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 1.4e-07 59.7 58 53.4
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 2.4e-07 58.9 54 55.6
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 5.4e-07 57.8 53 58.5
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 7.0e-07 57.4 54 57.4
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.0e-06 55.8 65 47.7
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 4.5e-06 54.7 75 44.0
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-06 54.3 47 57.4
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 7.8e-06 53.9 44 61.4


User provided reference genes

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