Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035620.2 Solanum lycopersicum HOM05D006638 ORTHO05D008246 2.4e-26 121.3 58 100.0
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 5.2e-13 77.0 48 75.0
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 3.4e-12 74.3 52 63.5
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 5.8e-12 73.6 51 66.7
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 5.8e-12 73.6 48 72.9
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 1.3e-11 72.4 48 68.8
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 1.3e-11 72.4 48 70.8
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 1.3e-11 72.4 48 70.8
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 1.7e-11 72.0 48 64.6
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.7e-11 72.0 48 64.6
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.7e-11 72.0 48 64.6
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.7e-11 72.0 48 64.6
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 1.7e-11 72.0 48 64.6
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 2.2e-11 71.6 48 66.7
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 2.2e-11 71.6 47 66.0
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 2.9e-11 71.2 48 66.7
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 6.4e-11 70.1 48 66.7
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 6.4e-11 70.1 48 62.5
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 6.4e-11 70.1 52 63.5
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 8.3e-11 69.7 48 62.5
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 8.3e-11 69.7 48 62.5
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 1.1e-10 69.3 48 62.5
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 1.1e-10 69.3 48 62.5
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 1.1e-10 69.3 44 68.2
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 1.1e-10 69.3 48 62.5
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 1.1e-10 69.3 48 60.4
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.4e-10 68.9 48 64.6
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 1.4e-10 68.9 48 62.5
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 1.4e-10 68.9 48 60.4
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.9e-10 68.6 48 64.6
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 2.4e-10 68.2 45 64.4
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 64.6
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 64.6
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 62.5
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 62.5
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 60.4
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 2.4e-10 68.2 48 62.5
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 3.2e-10 67.8 48 64.6
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 3.2e-10 67.8 46 63.0
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 3.2e-10 67.8 45 64.4
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 64.6
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 62.5
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 58.3
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 4.1e-10 67.4 46 65.2
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 60.4
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 62.5
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 60.4
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 4.1e-10 67.4 48 60.4
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 5.4e-10 67.0 45 66.7
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 5.4e-10 67.0 48 60.4
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 5.4e-10 67.0 48 60.4
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 5.4e-10 67.0 48 64.6
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 5.4e-10 67.0 48 62.5
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 5.4e-10 67.0 48 60.4
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 7.1e-10 66.6 48 60.4
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 7.1e-10 66.6 45 62.2
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 7.1e-10 66.6 48 64.6
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 7.1e-10 66.6 48 60.4
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 9.2e-10 66.2 48 60.4
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 1.2e-09 65.9 48 60.4
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 1.6e-09 65.5 48 62.5
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 1.6e-09 65.5 48 62.5
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 2.7e-09 64.7 46 63.0
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 2.7e-09 64.7 46 60.9
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 2.7e-09 64.7 49 67.3
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 2.7e-09 64.7 48 62.5
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 3.5e-09 64.3 48 58.3
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 4.6e-09 63.9 47 57.4
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 6.0e-09 63.5 47 59.6
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 6.0e-09 63.5 45 62.2
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 6.0e-09 63.5 46 60.9
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 1.0e-08 62.8 48 58.3
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 1.0e-08 62.8 46 63.0
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 1.0e-08 62.8 45 62.2
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 1.0e-08 62.8 48 58.3
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 1.3e-08 62.4 52 57.7
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 1.3e-08 62.4 50 56.0
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.3e-08 62.4 48 58.3
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 2.3e-08 61.6 48 60.4
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 2.3e-08 61.6 48 56.2
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 2.3e-08 61.6 46 56.5
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 3.9e-08 60.8 45 60.0
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 3.9e-08 60.8 45 60.0
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 6.6e-08 60.1 46 63.0
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 6.6e-08 60.1 43 62.8
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 6.6e-08 60.1 39 64.1
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 8.6e-08 59.7 43 60.5
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 1.5e-07 58.9 48 50.0
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 3.3e-07 57.8 45 57.8
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 5.6e-07 57.0 45 57.8
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 9.5e-07 56.2 44 59.1
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 1.2e-06 55.8 48 54.2
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 1.2e-06 55.8 48 54.2
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 1.2e-06 55.8 48 54.2
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 2.1e-06 55.1 48 50.0
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 3.6e-06 54.3 44 54.5
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 8.1e-06 53.1 50 50.0


User provided reference genes

Program Settings