Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035500.3 Solanum lycopersicum HOM05D001171 ORTHO05D006126 0.0e+00 1366.7 687 100.0
Sopen12g015420 Solanum pennellii HOM05D001171 ORTHO05D006126 0.0e+00 1252.7 649 98.2
CAN.G828.1 Capsicum annuum HOM05D001171 ORTHO05D006126 0.0e+00 1150.2 649 88.6
Nitab4.5_0001098g0040 Nicotiana tabacum HOM05D001171 ORTHO05D006126 0.0e+00 1108.2 673 83.7
Peaxi162Scf00518g00435 Petunia axillaris HOM05D001171 ORTHO05D006126 0.0e+00 1101.3 655 83.5
Cc00_g13520 Coffea canephora HOM05D001171 ORTHO05D006126 1.7e-267 926.0 650 70.9
Dinv10966 Davidia involucrata HOM05D001171 ORTHO05D006126 1.9e-258 896.0 650 67.7
CSS0006395 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 3.6e-254 881.7 653 66.5
Migut.E00023 Erythranthe guttata HOM05D001171 ORTHO05D006126 5.8e-252 874.4 650 66.2
MSTRG.2457 Avicennia marina HOM05D001171 ORTHO05D006126 1.9e-250 869.4 653 66.0
Actinidia20704 Actinidia chinensis HOM05D001171 ORTHO05D006126 2.3e-248 862.4 650 65.1
TAR622G0378 Trochodendron aralioides HOM05D001171 ORTHO05D006126 4.0e-245 851.7 650 63.1
RcHm_v2.0_Chr4g0430551 Rosa chinensis HOM05D001171 ORTHO05D006126 8.9e-245 850.5 650 63.7
Oeu058919.3 Olea europaea HOM05D001171 ORTHO05D006126 1.5e-244 849.7 606 69.6
Nn3g16495 Nelumbo nucifera HOM05D001171 ORTHO05D006126 2.6e-244 849.0 650 63.2
Prupe.1G227300 Prunus persica HOM05D001171 ORTHO05D006126 2.9e-243 845.5 650 62.8
Cfa009328 Carpinus fangiana HOM05D001171 ORTHO05D006126 4.9e-243 844.7 650 63.1
Manes.12G012600 Manihot esculenta HOM05D001171 ORTHO05D006126 1.1e-242 843.6 650 63.1
Thecc.02G210400 Theobroma cacao HOM05D001171 ORTHO05D006126 4.1e-242 841.6 649 63.5
Duzib248G1370 Durio zibethinus HOM05D001171 ORTHO05D006126 5.4e-242 841.3 649 63.3
MD13G1117700 Malus domestica HOM05D001171 ORTHO05D006126 1.7e-240 836.3 649 62.7
Actinidia09656 Actinidia chinensis HOM05D001171 ORTHO05D006126 1.1e-239 833.6 650 63.4
Gohir.D05G311700 Gossypium hirsutum HOM05D001171 ORTHO05D006126 2.5e-239 832.4 649 63.0
Gorai.009G332800 Gossypium raimondii HOM05D001171 ORTHO05D006126 2.5e-239 832.4 649 63.0
CiPaw.05G111400 Carya illinoinensis HOM05D001171 ORTHO05D006126 9.6e-239 830.5 650 63.4
HanXRQChr08g0207751 Helianthus annuus HOM05D001171 ORTHO05D006126 9.6e-239 830.5 649 62.7
Sabra08G0133800 Salix brachista HOM05D001171 ORTHO05D006126 1.6e-238 829.7 653 62.0
Potri.008G175400 Populus trichocarpa HOM05D001171 ORTHO05D006126 8.1e-238 827.4 646 62.4
Gohir.A05G310900 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.1e-237 827.0 649 62.6
FvH4_4g23910 Fragaria vesca HOM05D001171 ORTHO05D006126 2.4e-237 825.9 651 61.4
SalBow8G5464 Salvia bowleyana HOM05D001171 ORTHO05D006126 3.1e-237 825.5 646 62.8
SGA_v2.0_scaffold87G27147 Striga asiatica HOM05D001171 ORTHO05D006126 1.2e-236 823.5 650 63.4
Ciclev10030679m.g Citrus clementina HOM05D001171 ORTHO05D006126 1.5e-236 823.2 650 62.0
Hma1.2p1_0065F.1_g035610 Hydrangea macrophylla HOM05D001171 ORTHO05D006126 5.8e-236 821.2 650 63.7
CiPaw.06G101600 Carya illinoinensis HOM05D001171 ORTHO05D006126 1.7e-235 819.7 649 61.9
QL03p053673 Quercus lobata HOM05D001171 ORTHO05D006126 2.9e-235 818.9 648 61.9
Phvul.002G174700 Phaseolus vulgaris HOM05D001171 ORTHO05D006126 3.8e-235 818.5 651 61.6
COL.COLO4_20384 Corchorus olitorius HOM05D001171 ORTHO05D006126 6.4e-235 817.8 649 60.7
MD16G1117900 Malus domestica HOM05D001171 ORTHO05D006126 1.4e-234 816.6 649 61.5
GSVIVG01010452001 Vitis vinifera HOM05D001171 ORTHO05D006126 3.2e-234 815.5 650 62.6
TWI36G0373 Tripterygium wilfordii HOM05D001171 ORTHO05D006126 2.1e-233 812.8 650 60.9
CANSAT01G1884 Cannabis sativa HOM05D001171 ORTHO05D006126 7.8e-233 810.8 649 61.8
FAN07G0777 Fragaria x ananassa HOM05D001171 ORTHO05D006126 7.8e-233 810.8 656 61.0
arahy.Tifrunner.gnm1.ann1.2F0YN9 Arachis hypogaea HOM05D001171 ORTHO05D006126 8.7e-232 807.4 651 60.4
Rhsim12G0099100 Rhododendron simsii HOM05D001171 ORTHO05D006126 8.7e-232 807.4 650 62.3
FAN17G1139 Fragaria x ananassa HOM05D001171 ORTHO05D006126 1.5e-231 806.6 673 59.6
PSO063G5985 Papaver somniferum HOM05D001171 ORTHO05D006126 2.5e-231 805.8 649 60.2
TPR.G17090 Trifolium pratense HOM05D001171 ORTHO05D006126 3.3e-231 805.4 650 60.5
Glyma.05G146600 Glycine max HOM05D001171 ORTHO05D006126 7.3e-231 804.3 651 60.8
PGR102G0186 Punica granatum HOM05D001171 ORTHO05D006126 7.3e-231 804.3 650 59.1
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 9.6e-231 803.9 642 61.5
Eucgr.B03486 Eucalyptus grandis HOM05D001171 ORTHO05D006126 2.1e-230 802.7 649 60.1
Aqoxy5G03404 Aquilegia oxysepala HOM05D001171 ORTHO05D006126 4.8e-230 801.6 649 60.6
Ca_18053_v3 Cicer arietinum L. HOM05D001171 ORTHO05D006126 4.8e-230 801.6 651 60.7
Lj4g0002448 Lotus japonicus HOM05D001171 ORTHO05D006126 4.8e-230 801.6 650 61.1
MBI11_g07459_MAGBIO Magnolia biondii HOM05D001171 ORTHO05D006126 2.6e-228 795.8 658 60.6
PSO782G3690 Papaver somniferum HOM05D001171 ORTHO05D006126 3.4e-228 795.4 651 59.9
Lj3C1067G5 Lonicera japonica HOM05D001171 ORTHO05D006126 3.8e-227 792.0 637 62.5
Atru.chr11.2309 Acer truncatum HOM05D001171 ORTHO05D006126 9.3e-226 787.3 665 58.8
VMungo0251G3321 Vigna mungo HOM05D001171 ORTHO05D006126 1.6e-225 786.6 640 60.8
Medtr8g080470 Medicago truncatula HOM05D001171 ORTHO05D006126 3.5e-225 785.4 651 60.2
Potri.010G060500 Populus trichocarpa HOM05D001171 ORTHO05D006126 1.0e-224 783.9 648 60.5
Lj6A825T69 Lonicera japonica HOM05D001171 ORTHO05D006126 1.3e-224 783.5 690 59.4
CSS0011449 Camellia sinensis var. sinensis HOM05D001171 ORTHO05D006126 2.5e-223 779.2 681 58.9
Duzib268G1390 Durio zibethinus HOM05D001171 ORTHO05D006126 9.6e-223 777.3 649 59.9
arahy.Tifrunner.gnm1.ann1.8PLQ7K Arachis hypogaea HOM05D001171 ORTHO05D006126 1.3e-222 776.9 651 58.8
Lalb_Chr12g0206251 Lupinus albus HOM05D001171 ORTHO05D006126 3.6e-222 775.4 651 58.7
Lalb_Chr13g0294301 Lupinus albus HOM05D001171 ORTHO05D006126 4.8e-222 775.0 652 59.5
MELO3C011454.2 Cucumis melo HOM05D001171 ORTHO05D006126 6.2e-222 774.6 650 58.9
CsaV3_6G032260 Cucumis sativus L. HOM05D001171 ORTHO05D006126 6.9e-221 771.2 652 59.2
Haze_12399 Corylus avellana HOM05D001171 ORTHO05D006126 1.2e-220 770.4 637 60.1
Sed0016407 Sechium edule HOM05D001171 ORTHO05D006126 1.2e-220 770.4 650 58.6
Dinv14829 Davidia involucrata HOM05D001171 ORTHO05D006126 2.6e-220 769.2 648 62.2
ClCG08G010100 Citrullus lanatus HOM05D001171 ORTHO05D006126 2.1e-217 759.6 640 58.8
HPP92_007002 Vanilla planifolia HOM05D001171 ORTHO05D006126 5.1e-216 755.0 646 57.4
Lsat_1_v5_gn_8_149401 Lactuca sativa HOM05D001171 ORTHO05D006126 1.5e-215 753.4 643 58.3
AUR62005606 Chenopodium quinoa HOM05D001171 ORTHO05D006126 1.6e-209 733.4 651 55.1
AUR62024123 Chenopodium quinoa HOM05D001171 ORTHO05D006126 1.6e-209 733.4 651 55.1
EL10Ac6g13486 Beta vulgaris HOM05D001171 ORTHO05D006126 1.9e-207 726.5 657 54.9
THA.LOC104825512 Tarenaya hassleriana HOM05D001171 ORTHO05D006126 1.4e-205 720.3 652 55.8
ATR0561G160 Amborella trichopoda HOM05D001171 ORTHO05D006126 2.6e-204 716.1 650 54.8
CDE05G2832 Ceratophyllum demersum HOM05D001171 ORTHO05D006126 5.0e-203 711.8 653 55.1
CARHR059950 Cardamine hirsuta HOM05D001171 ORTHO05D006126 9.3e-202 707.6 650 54.2
BraA07t30880Z Brassica rapa HOM05D001171 ORTHO05D006126 1.2e-201 707.2 650 55.2
C06p38700 Brassica napus HOM05D001171 ORTHO05D006126 2.1e-201 706.4 651 55.5
BcaB03g15201 Brassica carinata HOM05D001171 ORTHO05D006126 7.9e-201 704.5 650 54.5
A07p32560 Brassica napus HOM05D001171 ORTHO05D006126 1.8e-200 703.4 650 54.3
Glyma.08G103300 Glycine max HOM05D001171 ORTHO05D006126 2.3e-200 703.0 575 60.9
BraA07t31024Z Brassica rapa HOM05D001171 ORTHO05D006126 6.7e-200 701.4 650 54.3
A07p33970 Brassica napus HOM05D001171 ORTHO05D006126 3.3e-199 699.1 650 54.2
Sp5g22350 Schrenkiella parvula HOM05D001171 ORTHO05D006126 4.3e-199 698.7 650 54.3
Carub.0002s1375 Capsella rubella HOM05D001171 ORTHO05D006126 5.7e-199 698.4 650 54.3
C06p42880 Brassica napus HOM05D001171 ORTHO05D006126 1.6e-198 696.8 650 54.2
BolC6t39150H Brassica oleracea HOM05D001171 ORTHO05D006126 2.2e-198 696.4 650 54.2
Zm00001eb305460 Zea mays HOM05D001171 ORTHO05D006126 2.8e-198 696.0 646 53.6
Thhalv10018109m.g Eutrema salsugineum HOM05D001171 ORTHO05D006126 4.8e-198 695.3 650 54.2
BolC6t38960H Brassica oleracea HOM05D001171 ORTHO05D006126 6.3e-198 694.9 674 53.7
BcaC08g46164 Brassica carinata HOM05D001171 ORTHO05D006126 8.2e-198 694.5 650 54.0
Os07g0295800 Oryza sativa ssp. japonica HOM05D001171 ORTHO05D006126 2.0e-196 689.9 646 53.9
AT1G67420 Arabidopsis thaliana HOM05D001171 ORTHO05D006126 1.1e-194 684.1 671 52.3
Aa31sc475G10 Aethionema arabicum HOM05D001171 ORTHO05D006126 1.2e-193 680.6 676 51.9
BcaB03g15356 Brassica carinata HOM05D001171 ORTHO05D006126 6.7e-192 674.9 657 53.3
Hund06085 Selenicereus undatus HOM05D001171 ORTHO05D006126 8.2e-190 667.9 663 53.8
FAN22G1166 Fragaria x ananassa HOM05D001171 ORTHO05D006126 2.0e-183 646.7 511 60.9
FAN12G3364 Fragaria x ananassa HOM05D001171 ORTHO05D006126 2.8e-182 642.9 511 60.5
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 3.1e-173 612.8 728 47.0
Sc11g0000480 Simmondsia chinensis HOM05D001171 ORTHO05D006126 9.1e-173 611.3 551 55.2
Psat7g077720 Pisum sativum HOM05D001171 ORTHO05D006126 7.7e-172 608.2 493 61.3
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 7.2e-170 601.7 490 60.2
Cpa.g.sc43.41 Carica papaya HOM05D001171 ORTHO05D006126 1.9e-162 577.0 555 54.1
Haze_12401 Corylus avellana HOM05D001171 ORTHO05D006126 2.1e-161 573.5 491 59.7
Sabra10G0045500 Salix brachista HOM05D001171 ORTHO05D006126 3.6e-153 546.2 524 55.9
SHI17955 Sapria himalayana HOM05D001171 ORTHO05D006126 2.6e-151 540.0 661 46.3
Nitab4.5_0000011g0310 Nicotiana tabacum HOM05D001171 ORTHO05D006126 5.2e-144 515.8 291 87.6
Mapoly0009s0031 Marchantia polymorpha HOM05D001171 ORTHO05D006126 4.6e-140 502.7 660 44.5
unitig_744.g24422 Utricularia gibba HOM05D001171 ORTHO05D006126 5.6e-130 469.2 646 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2095 Anthoceros agrestis HOM05D001171 ORTHO05D006126 8.6e-123 445.3 581 42.2
Pp3c11_25820 Physcomitrium patens HOM05D001171 ORTHO05D006126 2.0e-119 434.1 660 38.6
SMO116G0357 Selaginella moellendorffii HOM05D001171 ORTHO05D006126 1.4e-117 427.9 663 40.0
vmacro16110 Vaccinium macrocarpon HOM05D001171 ORTHO05D006126 3.3e-114 416.8 375 60.5
Gohir.A01G160800 Gossypium hirsutum HOM05D001171 ORTHO05D006126 7.9e-108 395.6 311 62.7
Nitab4.5_0000011g0290 Nicotiana tabacum HOM05D001171 ORTHO05D006126 2.9e-102 377.1 220 86.8
arahy.Tifrunner.gnm1.ann1.BTPC7R Arachis hypogaea HOM05D001171 ORTHO05D006126 1.9e-82 311.2 289 53.3
SEGI_39555 Sequoiadendron giganteum HOM05D001171 ORTHO05D006126 8.5e-46 189.5 158 56.3
GSVIVG01029097001 Vitis vinifera HOM05D001171 ORTHO05D006126 8.5e-46 189.5 135 64.4
Cpa.g.sc351.6 Carica papaya HOM05D001171 ORTHO05D006126 2.5e-45 188.0 184 49.5
Peaxi162Scf00134g00811 Petunia axillaris HOM05D001171 ORTHO05D006126 5.2e-35 153.7 96 76.0
Peaxi162Scf00548g00418 Petunia axillaris HOM05D001171 ORTHO05D006126 6.8e-35 153.3 104 75.0
Peaxi162Scf00768g00005 Petunia axillaris HOM05D001171 ORTHO05D006126 6.8e-35 153.3 104 75.0
Sabra10G0045600 Salix brachista HOM05D001171 ORTHO05D006126 1.4e-32 145.6 105 61.9
CBR_g21983 Chara braunii HOM05D001171 ORTHO05D006126 3.1e-27 127.9 324 30.2
CBR_g21981 Chara braunii HOM05D000505 ORTHO05D000301 6.8e-27 126.7 247 35.6
Cre02.g108100 Chlamydomonas reinhardtii HOM05D001171 ORTHO05D006126 2.6e-18 98.2 348 29.3
PRCOL_00002212 Prasinoderma coloniale HOM05D001171 ORTHO05D006126 2.1e-15 88.6 663 24.6
TWI15G1196 Tripterygium wilfordii HOM05D002510 ORTHO05D007210 5.1e-14 84.0 500 23.2
Atru.chr12.781 Acer truncatum HOM05D002510 ORTHO05D007210 8.1e-12 76.6 467 24.0
PSO384G1458 Papaver somniferum HOM05D002510 ORTHO05D007210 1.4e-11 75.9 488 22.5
Atru.chr12.757 Acer truncatum HOM05D002510 ORTHO05D007210 2.3e-11 75.1 471 23.6
PSO339G3140 Papaver somniferum HOM05D002510 ORTHO05D007210 2.3e-11 75.1 470 22.6
Ah.08g213550 Amaranthus hybridus HOM05D002510 ORTHO05D007210 6.8e-11 73.6 511 22.7
Sed0025740 Sechium edule HOM05D002510 ORTHO05D007210 6.8e-11 73.6 459 22.9
C01p27080 Brassica napus HOM05D002510 ORTHO05D007210 1.5e-10 72.4 486 23.7
CAN.G656.24 Capsicum annuum HOM05D002510 ORTHO05D007210 1.5e-10 72.4 518 21.4
THA.LOC104827301 Tarenaya hassleriana HOM05D002510 ORTHO05D007210 1.5e-10 72.4 458 24.7
Carub.0006s1900 Capsella rubella HOM05D002510 ORTHO05D007210 2.0e-10 72.0 505 24.0
A01p21720 Brassica napus HOM05D002510 ORTHO05D007210 2.6e-10 71.6 483 23.0
BraA01t02081Z Brassica rapa HOM05D002510 ORTHO05D007210 2.6e-10 71.6 483 23.0
Aqoxy2G01930 Aquilegia oxysepala HOM05D002510 ORTHO05D007210 3.4e-10 71.2 471 23.4
Cfa001648 Carpinus fangiana HOM05D002510 ORTHO05D007210 3.4e-10 71.2 486 23.9
BolC1t02655H Brassica oleracea HOM05D002510 ORTHO05D007210 4.4e-10 70.9 486 23.7
TAR633G1832 Trochodendron aralioides HOM05D002510 ORTHO05D007210 7.6e-10 70.1 511 21.3
TPR.G1937 Trifolium pratense HOM05D002510 ORTHO05D007210 9.9e-10 69.7 484 24.4
arahy.Tifrunner.gnm1.ann1.N08USM Arachis hypogaea HOM05D001171 ORTHO05D006126 1.3e-09 69.3 260 27.3
Pp3c15_14500 Physcomitrium patens HOM05D002510 ORTHO05D007210 1.3e-09 69.3 166 30.1
AT5G20660 Arabidopsis thaliana HOM05D002510 ORTHO05D007210 1.7e-09 68.9 504 22.4
Lsat_1_v5_gn_8_20140 Lactuca sativa HOM05D002510 ORTHO05D007210 1.7e-09 68.9 244 25.0
CSS0007795 Camellia sinensis var. sinensis HOM05D002510 ORTHO05D007210 2.2e-09 68.6 469 23.0
Thhalv10024352m.g Eutrema salsugineum HOM05D002510 ORTHO05D007210 3.8e-09 67.8 478 22.2
EL10Ac3g06545 Beta vulgaris HOM05D002510 ORTHO05D007210 4.9e-09 67.4 396 25.3
CARHR290280 Cardamine hirsuta HOM05D002510 ORTHO05D007210 4.9e-09 67.4 468 21.6
Ca_10569_v3 Cicer arietinum L. HOM05D002800 ORTHO05D008563 6.4e-09 67.0 234 26.5
Nn2g10809 Nelumbo nucifera HOM05D002510 ORTHO05D007210 6.4e-09 67.0 468 23.9
Solyc04g025260.3 Solanum lycopersicum HOM05D002510 ORTHO05D007210 6.4e-09 67.0 516 22.7
Peaxi162Scf00086g01218 Petunia axillaris HOM05D001171 ORTHO05D006126 8.4e-09 66.6 82 47.6
Potri.008G039400 Populus trichocarpa HOM05D002510 ORTHO05D007210 8.4e-09 66.6 485 22.1
Manes.10G046500 Manihot esculenta HOM05D002510 ORTHO05D007210 1.4e-08 65.9 319 25.1
Sopen04g011710 Solanum pennellii HOM05D002510 ORTHO05D007210 1.4e-08 65.9 519 21.6
AL6G32210 Arabidopsis lyrata HOM05D002510 ORTHO05D007210 1.9e-08 65.5 504 21.6
Sp7g14310 Schrenkiella parvula HOM05D002510 ORTHO05D007210 4.1e-08 64.3 510 21.6
ECA233G4317 Erigeron canadensis HOM05D002510 ORTHO05D007210 5.4e-08 63.9 466 21.7
MCO05G511 Micromonas commoda HOM05D002510 ORTHO05D007210 5.4e-08 63.9 98 35.7
Oeu014387.1 Olea europaea HOM05D002510 ORTHO05D007210 5.4e-08 63.9 320 22.8
SMO364G0963 Selaginella moellendorffii HOM05D002510 ORTHO05D007210 9.2e-08 63.2 463 23.8
Hund12052 Selenicereus undatus HOM05D002510 ORTHO05D007210 1.6e-07 62.4 483 22.8
GSVIVG01016269001 Vitis vinifera HOM05D002510 ORTHO05D007210 1.6e-07 62.4 495 22.8
Migut.F01756 Erythranthe guttata HOM05D002510 ORTHO05D007210 3.5e-07 61.2 481 22.5
MCO03G206 Micromonas commoda HOM05D001171 ORTHO05D006126 3.5e-07 61.2 90 37.8
MELO3C012427.2 Cucumis melo HOM05D002510 ORTHO05D007210 1.0e-06 59.7 398 21.6
Manes.10G046400 Manihot esculenta HOM05D002510 ORTHO05D007210 1.0e-06 59.7 463 21.8
Gohir.D02G103300 Gossypium hirsutum HOM05D001171 ORTHO05D006126 1.3e-06 59.3 47 61.7
Sc09g0006280 Simmondsia chinensis HOM05D002510 ORTHO05D007210 3.0e-06 58.2 512 20.9
MSTRG.8144 Avicennia marina HOM05D002510 ORTHO05D007210 6.6e-06 57.0 402 22.4
Pp3c9_12500 Physcomitrium patens HOM05D002510 ORTHO05D007210 6.6e-06 57.0 507 23.1
HPP92_008761 Vanilla planifolia HOM05D002510 ORTHO05D007210 6.6e-06 57.0 246 24.8


User provided reference genes

Program Settings