Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g035420.3 Solanum lycopersicum HOM05D002118 ORTHO05D002356 7.6e-89 330.5 168 100.0
PGSC0003DMG400002482 Solanum tuberosum HOM05D002118 ORTHO05D002356 1.2e-30 137.1 272 38.6
Manes.04G143600 Manihot esculenta HOM05D002118 ORTHO05D002356 1.6e-30 136.7 235 42.1
Solyc03g121980.3 Solanum lycopersicum HOM05D002118 ORTHO05D002356 2.7e-30 136.0 272 38.2
Sopen03g040800 Solanum pennellii HOM05D002118 ORTHO05D002356 2.7e-30 136.0 272 38.2
unitig_748.g7366 Utricularia gibba HOM05D002118 ORTHO05D002356 6.8e-29 131.3 272 37.1
CAN.G1368.8 Capsicum annuum HOM05D002118 ORTHO05D002356 2.6e-28 129.4 272 36.4
CAN.G2002.2 Capsicum annuum HOM05D002118 ORTHO05D002356 2.6e-28 129.4 272 36.4
Atru.chr1.3912 Acer truncatum HOM05D002118 ORTHO05D002356 3.4e-28 129.0 272 36.8
Migut.I01065 Erythranthe guttata HOM05D002118 ORTHO05D002356 1.3e-27 127.1 272 36.4
TWI31G0509 Tripterygium wilfordii HOM05D002118 ORTHO05D002356 1.3e-27 127.1 272 36.0
CAN.G862.27 Capsicum annuum HOM05D002118 ORTHO05D002356 1.7e-27 126.7 272 38.2
PGR102G2219 Punica granatum HOM05D002118 ORTHO05D002356 2.2e-27 126.3 272 36.4
PGSC0003DMG400011597 Solanum tuberosum HOM05D002118 ORTHO05D002356 2.8e-27 125.9 272 37.1
Sopen12g023750 Solanum pennellii HOM05D002118 ORTHO05D002356 3.7e-27 125.6 272 37.1
Potri.003G063500 Populus trichocarpa HOM05D002118 ORTHO05D002356 6.3e-27 124.8 272 35.7
CSS0010461 Camellia sinensis var. sinensis HOM05D002118 ORTHO05D002356 8.3e-27 124.4 272 36.4
CSS0016873 Camellia sinensis var. sinensis HOM05D002118 ORTHO05D002356 8.3e-27 124.4 272 36.4
TAR624G0052 Trochodendron aralioides HOM05D002118 ORTHO05D002356 8.3e-27 124.4 272 35.7
Ciclev10025777m.g Citrus clementina HOM05D002118 ORTHO05D002356 3.1e-26 122.5 272 36.4
Actinidia26032 Actinidia chinensis HOM05D002118 ORTHO05D002356 4.1e-26 122.1 270 35.9
Glyma.16G006600 Glycine max HOM05D002118 ORTHO05D002356 4.1e-26 122.1 272 36.4
arahy.Tifrunner.gnm1.ann1.6LV2G4 Arachis hypogaea HOM05D002118 ORTHO05D002356 5.4e-26 121.7 272 35.7
arahy.Tifrunner.gnm1.ann1.W7NSCD Arachis hypogaea HOM05D002118 ORTHO05D002356 5.4e-26 121.7 272 35.7
Sabra03G0037100 Salix brachista HOM05D002118 ORTHO05D002356 5.4e-26 121.7 293 35.2
Aqoxy7G01088 Aquilegia oxysepala HOM05D002118 ORTHO05D002356 7.0e-26 121.3 270 36.3
COL.COLO4_30771 Corchorus olitorius HOM05D002118 ORTHO05D002356 7.0e-26 121.3 272 36.0
SGA_v2.0_scaffold68G22884 Striga asiatica HOM05D002118 ORTHO05D002356 7.0e-26 121.3 272 36.0
THA.LOC104812242 Tarenaya hassleriana HOM05D002118 ORTHO05D002356 7.0e-26 121.3 272 35.7
TWI79G1251 Tripterygium wilfordii HOM05D002118 ORTHO05D002356 7.0e-26 121.3 272 35.3
Nn8g38716 Nelumbo nucifera HOM05D002118 ORTHO05D002356 9.1e-26 120.9 272 36.8
ATR0789G009 Amborella trichopoda HOM05D002118 ORTHO05D002356 1.6e-25 120.2 272 35.3
Glyma.07G037200 Glycine max HOM05D002118 ORTHO05D002356 1.6e-25 120.2 272 36.0
MSTRG.9515 Avicennia marina HOM05D002118 ORTHO05D002356 2.0e-25 119.8 272 35.7
Os05g0357600 Oryza sativa ssp. japonica HOM05D002118 ORTHO05D002356 2.0e-25 119.8 272 35.3
Sed0024258 Sechium edule HOM05D002118 ORTHO05D002356 2.0e-25 119.8 272 34.9
Duzib160G0154 Durio zibethinus HOM05D002118 ORTHO05D002356 2.7e-25 119.4 272 35.7
Sed0010635 Sechium edule HOM05D002118 ORTHO05D002356 2.7e-25 119.4 272 35.7
THA.LOC104808051 Tarenaya hassleriana HOM05D002118 ORTHO05D002356 2.7e-25 119.4 272 35.3
EL10Ac7g16403 Beta vulgaris HOM05D002118 ORTHO05D002356 3.5e-25 119.0 248 36.7
MELO3C025810.2 Cucumis melo HOM05D002118 ORTHO05D002356 3.5e-25 119.0 272 35.3
CsaV3_3G043530 Cucumis sativus L. HOM05D002118 ORTHO05D002356 3.5e-25 119.0 272 35.3
Phvul.010G131300 Phaseolus vulgaris HOM05D002118 ORTHO05D002356 3.5e-25 119.0 272 35.7
Thecc.06G118600 Theobroma cacao HOM05D002118 ORTHO05D002356 3.5e-25 119.0 272 35.7
VMungo0331G1216 Vigna mungo HOM05D002118 ORTHO05D002356 4.5e-25 118.6 272 35.7
GSVIVG01016778001 Vitis vinifera HOM05D002118 ORTHO05D002356 4.5e-25 118.6 272 36.0
Cpa.g.sc25.105 Carica papaya HOM05D002118 ORTHO05D002356 5.9e-25 118.2 272 35.7
Gohir.A05G140700 Gossypium hirsutum HOM05D002118 ORTHO05D002356 7.7e-25 117.9 272 35.3
Lj3g0007974 Lotus japonicus HOM05D002118 ORTHO05D002356 7.7e-25 117.9 272 35.7
Mapoly0039s0008 Marchantia polymorpha HOM05D002118 ORTHO05D002356 7.7e-25 117.9 272 36.0
C06p46980 Brassica napus HOM05D002118 ORTHO05D002356 1.0e-24 117.5 268 34.7
Duzib235G1195 Durio zibethinus HOM05D002118 ORTHO05D002356 1.0e-24 117.5 272 35.3
Eucgr.J02824 Eucalyptus grandis HOM05D002118 ORTHO05D002356 1.0e-24 117.5 272 35.3
Nitab4.5_0002072g0050 Nicotiana tabacum HOM05D002118 ORTHO05D002356 1.0e-24 117.5 272 35.7
Nitab4.5_0012253g0020 Nicotiana tabacum HOM05D002118 ORTHO05D002356 1.0e-24 117.5 272 35.7
Nn6g35593 Nelumbo nucifera HOM05D002118 ORTHO05D002356 1.3e-24 117.1 272 35.3
QL05p008166 Quercus lobata HOM05D002118 ORTHO05D002356 1.3e-24 117.1 271 35.4
Aa31LG7G2220 Aethionema arabicum HOM05D002118 ORTHO05D002356 1.7e-24 116.7 270 35.9
Eucgr.J02825 Eucalyptus grandis HOM05D002118 ORTHO05D002356 1.7e-24 116.7 272 34.6
Gohir.D05G142900 Gossypium hirsutum HOM05D002118 ORTHO05D002356 1.7e-24 116.7 272 34.9
CDE07G1984 Ceratophyllum demersum HOM05D002118 ORTHO05D002356 2.2e-24 116.3 269 37.5
Gorai.009G146800 Gossypium raimondii HOM05D002118 ORTHO05D002356 2.2e-24 116.3 276 34.8
Sp5g27720 Schrenkiella parvula HOM05D002118 ORTHO05D002356 2.2e-24 116.3 270 34.4
BcaB03g15005 Brassica carinata HOM05D002118 ORTHO05D002356 2.9e-24 115.9 270 34.4
BcaC08g46709 Brassica carinata HOM05D002118 ORTHO05D002356 2.9e-24 115.9 270 34.4
Hund05743 Selenicereus undatus HOM05D002118 ORTHO05D002356 3.8e-24 115.5 272 34.6
CANSAT56G1786 Cannabis sativa HOM05D002118 ORTHO05D002356 5.0e-24 115.2 272 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3157 Anthoceros agrestis HOM05D002118 ORTHO05D002356 6.5e-24 114.8 272 34.2
A07p38820 Brassica napus HOM05D002118 ORTHO05D002356 8.5e-24 114.4 276 33.7
BraA07t31436Z Brassica rapa HOM05D002118 ORTHO05D002356 8.5e-24 114.4 276 33.7
AT1G72660 Arabidopsis thaliana HOM05D002118 ORTHO05D002356 1.1e-23 114.0 270 34.4
A06p13400 Brassica napus HOM05D002118 ORTHO05D002356 1.1e-23 114.0 268 35.1
Ca_23367_v3 Cicer arietinum L. HOM05D002118 ORTHO05D002356 1.1e-23 114.0 270 34.8
Gohir.D06G200900 Gossypium hirsutum HOM05D002118 ORTHO05D002356 1.1e-23 114.0 272 34.2
Gorai.010G234400 Gossypium raimondii HOM05D002118 ORTHO05D002356 1.1e-23 114.0 269 34.9
Psat4g182520 Pisum sativum HOM05D002118 ORTHO05D002356 1.1e-23 114.0 270 34.8
Atru.chr1.3918 Acer truncatum HOM05D002118 ORTHO05D002356 1.5e-23 113.6 281 35.6
Carub.0002s1951 Capsella rubella HOM05D002118 ORTHO05D002356 1.5e-23 113.6 270 34.4
Thhalv10007806m.g Eutrema salsugineum HOM05D002118 ORTHO05D002356 1.5e-23 113.6 270 35.2
Thhalv10019770m.g Eutrema salsugineum HOM05D002118 ORTHO05D002356 1.5e-23 113.6 270 34.4
AL2G32340 Arabidopsis lyrata HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 34.1
C05p15880 Brassica napus HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 34.8
CARHR018070 Cardamine hirsuta HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 35.2
CARHR065580 Cardamine hirsuta HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 34.1
DCAR_016129 Daucus carota HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 35.9
Sp1g15610 Schrenkiella parvula HOM05D002118 ORTHO05D002356 1.9e-23 113.2 270 34.8
CiPaw.01G220000 Carya illinoinensis HOM05D002118 ORTHO05D002356 2.5e-23 112.8 272 35.3
AUR62009878 Chenopodium quinoa HOM05D002118 ORTHO05D002356 2.5e-23 112.8 270 34.1
FAN02G1960 Fragaria x ananassa HOM05D002118 ORTHO05D002356 2.5e-23 112.8 263 35.0
PSO063G3265 Papaver somniferum HOM05D002118 ORTHO05D002356 2.5e-23 112.8 270 34.8
PSO421G0207 Papaver somniferum HOM05D002118 ORTHO05D002356 2.5e-23 112.8 270 34.8
Peaxi162Scf00038g01823 Petunia axillaris HOM05D002118 ORTHO05D002356 2.5e-23 112.8 272 34.6
Carub.0001s1724 Capsella rubella HOM05D002118 ORTHO05D002356 3.2e-23 112.5 270 35.2
Cfa003541 Carpinus fangiana HOM05D002118 ORTHO05D002356 3.2e-23 112.5 272 34.2
Lsat_1_v5_gn_1_38001 Lactuca sativa HOM05D002118 ORTHO05D002356 3.2e-23 112.5 272 34.6
AL1G29760 Arabidopsis lyrata HOM05D002118 ORTHO05D002356 4.2e-23 112.1 270 35.2
AT1G17470 Arabidopsis thaliana HOM05D002118 ORTHO05D002356 4.2e-23 112.1 270 35.2
Pp3c9_19290 Physcomitrium patens HOM05D002118 ORTHO05D002356 4.2e-23 112.1 270 34.1
TPR.G32508 Trifolium pratense HOM05D002118 ORTHO05D002356 4.2e-23 112.1 270 34.4
Zm00001eb404270 Zea mays HOM05D002118 ORTHO05D002356 7.2e-23 111.3 272 34.2
BolC6t39738H Brassica oleracea HOM05D002118 ORTHO05D002219 9.4e-23 110.9 288 32.6
FAN05G0261 Fragaria x ananassa HOM05D002118 ORTHO05D002356 9.4e-23 110.9 263 34.6
FAN09G0352 Fragaria x ananassa HOM05D002118 ORTHO05D002356 9.4e-23 110.9 263 34.6
FAN14G3643 Fragaria x ananassa HOM05D002118 ORTHO05D002356 9.4e-23 110.9 263 34.6
Medtr8g020210 Medicago truncatula HOM05D002118 ORTHO05D002356 9.4e-23 110.9 270 34.1
Gohir.A06G193000 Gossypium hirsutum HOM05D002118 ORTHO05D002356 1.2e-22 110.5 272 33.5
MD17G1168800 Malus domestica HOM05D002118 ORTHO05D002356 1.2e-22 110.5 272 34.2
Potri.001G170300 Populus trichocarpa HOM05D002118 ORTHO05D002356 1.2e-22 110.5 272 33.8
MD09G1184900 Malus domestica HOM05D002118 ORTHO05D002356 1.6e-22 110.2 272 34.2
BolC5t30292H Brassica oleracea HOM05D002118 ORTHO05D002356 2.7e-22 109.4 282 33.3
ECA247G1997 Erigeron canadensis HOM05D002118 ORTHO05D002356 2.7e-22 109.4 272 34.6
HanXRQChr04g0094551 Helianthus annuus HOM05D002118 ORTHO05D002356 2.7e-22 109.4 272 33.8
Prupe.3G043000 Prunus persica HOM05D002118 ORTHO05D002356 2.7e-22 109.4 272 34.2
Actinidia39084 Actinidia chinensis HOM05D002118 ORTHO05D002356 4.7e-22 108.6 301 32.6
Lalb_Chr25g0281181 Lupinus albus HOM05D002118 ORTHO05D002356 4.7e-22 108.6 270 33.7
BraA06t24492Z Brassica rapa HOM05D002118 ORTHO05D002356 6.1e-22 108.2 283 32.9
CBR_g49625 Chara braunii HOM05D002118 ORTHO05D002356 6.1e-22 108.2 272 33.8
Haze_16019 Corylus avellana HOM05D002118 ORTHO05D002356 6.1e-22 108.2 287 34.8
FvH4_6g34550 Fragaria vesca HOM05D002118 ORTHO05D002356 6.1e-22 108.2 270 33.7
unitig_32.g11668 Utricularia gibba HOM05D002118 ORTHO05D002356 6.1e-22 108.2 310 31.6
PSO063G2096 Papaver somniferum HOM05D002118 ORTHO05D002356 8.0e-22 107.8 267 36.0
SMO367G0403 Selaginella moellendorffii HOM05D002118 ORTHO05D002356 8.0e-22 107.8 272 33.8
Sabra01G0141000 Salix brachista HOM05D002118 ORTHO05D002356 1.4e-21 107.1 285 32.3
DCAR_026412 Daucus carota HOM05D002118 ORTHO05D002356 1.5e-20 103.6 285 34.0
Oeu007566.1 Olea europaea HOM05D002118 ORTHO05D002356 4.4e-20 102.1 310 32.9
SalBow7G2275 Salvia bowleyana HOM05D002118 ORTHO05D002356 7.5e-20 101.3 319 29.8
AUR62001492 Chenopodium quinoa HOM05D002118 ORTHO05D002356 9.8e-20 100.9 258 32.9
Rhsim12G0209200 Rhododendron simsii HOM05D002118 ORTHO05D002356 9.8e-20 100.9 272 32.7
Lalb_Chr04g0263401 Lupinus albus HOM05D002118 ORTHO05D002356 2.8e-19 99.4 270 32.6
RcHm_v2.0_Chr2g0145081 Rosa chinensis HOM05D002118 ORTHO05D002356 2.4e-18 96.3 270 31.9
Lj5C38T8 Lonicera japonica HOM05D002118 ORTHO05D002356 2.7e-17 92.8 337 31.2
Solyc12g049270.3 Solanum lycopersicum HOM05D002118 ORTHO05D002356 7.7e-17 91.3 77 70.1
TAR383G0525 Trochodendron aralioides HOM05D002118 ORTHO05D002356 1.7e-16 90.1 77 66.2
Sc12g0010530 Simmondsia chinensis HOM05D002118 ORTHO05D002356 2.9e-16 89.4 77 63.6
BraA08t35019Z Brassica rapa HOM05D002118 ORTHO05D002356 6.6e-16 88.2 53 84.9
Cre01.g058886 Chlamydomonas reinhardtii HOM05D002118 ORTHO05D002356 8.9e-13 77.8 272 29.0
Cc04_g01420 Coffea canephora HOM05D002118 ORTHO05D002356 8.9e-13 77.8 83 51.8
SEGI_06919 Sequoiadendron giganteum HOM05D002118 ORTHO05D002356 8.9e-13 77.8 83 49.4
vmacro17054 Vaccinium macrocarpon HOM05D002118 ORTHO05D002356 9.8e-12 74.3 45 86.7
CDE06G0338 Ceratophyllum demersum HOM05D002118 ORTHO05D002356 1.3e-11 73.9 55 70.9
BcaC07g38865 Brassica carinata HOM05D002118 ORTHO05D002356 3.7e-11 72.4 81 48.1
A08p30870 Brassica napus HOM05D002118 ORTHO05D002356 8.3e-11 71.2 81 48.1
C08p17990 Brassica napus HOM05D002118 ORTHO05D002356 8.3e-11 71.2 81 48.1
BolC8t49434H Brassica oleracea HOM05D002118 ORTHO05D002356 8.3e-11 71.2 81 48.1
PRCOL_00004952 Prasinoderma coloniale HOM05D002118 ORTHO05D002356 1.1e-10 70.9 55 67.3
vmacro17053 Vaccinium macrocarpon HOM05D002118 ORTHO05D002356 5.4e-10 68.6 83 48.2
BraA08t35018Z Brassica rapa HOM05D002118 ORTHO05D002356 7.0e-10 68.2 53 67.9
HPP92_006472 Vanilla planifolia HOM05D002118 ORTHO05D002356 3.5e-09 65.9 48 70.8
MCO13G583 Micromonas commoda HOM05D002118 ORTHO05D002356 1.7e-08 63.5 59 55.9
QL10p005179 Quercus lobata HOM05D002118 ORTHO05D002356 2.8e-06 56.2 76 43.4


User provided reference genes

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