Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g027770.3 Solanum lycopersicum HOM05D006648 ORTHO05D008253 4.5e-28 127.1 59 100.0
Sopen12g013090 Solanum pennellii HOM05D006648 ORTHO05D008253 1.5e-15 85.5 38 100.0
PGSC0003DMG403013914 Solanum tuberosum HOM05D006648 ORTHO05D008253 4.1e-13 77.4 38 94.7
CAN.G94.9 Capsicum annuum HOM05D006648 ORTHO05D008253 2.6e-12 74.7 36 94.4
Nitab4.5_0021422g0010 Nicotiana tabacum HOM05D006648 ORTHO05D008253 1.7e-11 72.0 37 86.5
vmacro16390 Vaccinium macrocarpon HOM05D006648 ORTHO05D008253 2.2e-11 71.6 41 78.0
Nitab4.5_0000011g0060 Nicotiana tabacum HOM05D006648 ORTHO05D008253 2.9e-11 71.2 37 86.5
Rhsim12G0136600 Rhododendron simsii HOM05D006648 ORTHO05D008253 8.5e-11 69.7 36 86.1
Cc04_g08730 Coffea canephora HOM05D006648 ORTHO05D008253 1.1e-10 69.3 33 90.9
Oeu034438.1 Olea europaea HOM05D006648 ORTHO05D008253 1.9e-10 68.6 38 81.6
Thecc.03G074500 Theobroma cacao HOM05D006648 ORTHO05D008253 4.2e-10 67.4 32 87.5
Migut.D02056 Erythranthe guttata HOM05D006648 ORTHO05D008253 7.2e-10 66.6 30 93.3
VMungo0251G3616 Vigna mungo HOM05D006648 ORTHO05D008253 1.2e-09 65.9 32 84.4
COL.COLO4_06405 Corchorus olitorius HOM05D006648 ORTHO05D008253 1.6e-09 65.5 32 84.4
TPR.G30054 Trifolium pratense HOM05D006648 ORTHO05D008253 1.6e-09 65.5 34 85.3
HanXRQChr16g0503321 Helianthus annuus HOM05D006648 ORTHO05D008253 2.1e-09 65.1 29 96.6
LjContig00484g0018967 Lotus japonicus HOM05D006648 ORTHO05D008253 2.1e-09 65.1 32 87.5
CANSAT01G2528 Cannabis sativa HOM05D006648 ORTHO05D008253 2.7e-09 64.7 36 75.0
Cpa.g.sc111.36 Carica papaya HOM05D006648 ORTHO05D008253 2.7e-09 64.7 33 81.8
MBI03_g05121_MAGBIO Magnolia biondii HOM05D006648 ORTHO05D008253 3.6e-09 64.3 35 77.1
Medtr3g006290 Medicago truncatula HOM05D006648 ORTHO05D008253 3.6e-09 64.3 34 82.4
SalBow1G6461 Salvia bowleyana HOM05D006648 ORTHO05D008253 3.6e-09 64.3 30 93.3
arahy.Tifrunner.gnm1.ann1.NPI4TW Arachis hypogaea HOM05D006648 ORTHO05D008253 4.7e-09 63.9 38 73.7
arahy.Tifrunner.gnm1.ann1.WU90Y9 Arachis hypogaea HOM05D006648 ORTHO05D008253 4.7e-09 63.9 38 73.7
AUR62033067 Chenopodium quinoa HOM05D006648 ORTHO05D008253 4.7e-09 63.9 36 75.0
AUR62042217 Chenopodium quinoa HOM05D006648 ORTHO05D008253 4.7e-09 63.9 36 75.0
Dinv04103 Davidia involucrata HOM05D006648 ORTHO05D008253 4.7e-09 63.9 36 80.6
Glyma.05G248900 Glycine max HOM05D006648 ORTHO05D008253 4.7e-09 63.9 32 81.2
Gohir.D07G067000 Gossypium hirsutum HOM05D006648 ORTHO05D008253 4.7e-09 63.9 38 71.1
Lalb_Chr05g0221351 Lupinus albus HOM05D006648 ORTHO05D008253 4.7e-09 63.9 36 77.8
unitig_0.g24 Utricularia gibba HOM05D006648 ORTHO05D008253 4.7e-09 63.9 29 93.1
Cfa012641 Carpinus fangiana HOM05D006648 ORTHO05D008253 6.1e-09 63.5 31 83.9
CiPaw.15G092200 Carya illinoinensis HOM05D006648 ORTHO05D008253 6.1e-09 63.5 36 77.8
Glyma.08G057600 Glycine max HOM05D006648 ORTHO05D008253 6.1e-09 63.5 32 81.2
Gorai.001G070600 Gossypium raimondii HOM05D006648 ORTHO05D008253 6.1e-09 63.5 44 65.9
Psat7g000320 Pisum sativum HOM05D006648 ORTHO05D008253 6.1e-09 63.5 38 73.7
SGA_v2.0_scaffold164G38119 Striga asiatica HOM05D006648 ORTHO05D008253 6.1e-09 63.5 30 93.3
EL10Ac8g19442 Beta vulgaris HOM05D006648 ORTHO05D008253 7.9e-09 63.2 36 75.0
BcaB07g34009 Brassica carinata HOM05D006648 ORTHO05D008253 7.9e-09 63.2 33 81.8
A06p13910 Brassica napus HOM05D006648 ORTHO05D008253 7.9e-09 63.2 33 81.8
C05p16230 Brassica napus HOM05D006648 ORTHO05D008253 7.9e-09 63.2 33 81.8
BolC5t30325H Brassica oleracea HOM05D006648 ORTHO05D008253 7.9e-09 63.2 33 81.8
Actinidia35145 Actinidia chinensis HOM05D006648 ORTHO05D008253 1.0e-08 62.8 36 72.2
BraA06t24532Z Brassica rapa HOM05D006648 ORTHO05D008253 1.0e-08 62.8 32 84.4
ECA232G2150 Erigeron canadensis HOM05D006648 ORTHO05D008253 1.4e-08 62.4 29 93.1
Lj5A166T76 Lonicera japonica HOM05D006648 ORTHO05D008253 1.4e-08 62.4 36 72.2
Potri.015G029600 Populus trichocarpa HOM05D006648 ORTHO05D008253 1.4e-08 62.4 29 89.7
Carub.0001s1758 Capsella rubella HOM05D006648 ORTHO05D008253 1.8e-08 62.0 36 75.0
CsaV3_3G041250 Cucumis sativus L. HOM05D006648 ORTHO05D008253 1.8e-08 62.0 34 76.5
DCAR_014746 Daucus carota HOM05D006648 ORTHO05D008253 1.8e-08 62.0 36 77.8
FAN04G2085 Fragaria x ananassa HOM05D006648 ORTHO05D008253 1.8e-08 62.0 37 70.3
AL1G30210 Arabidopsis lyrata HOM05D006648 ORTHO05D008253 2.3e-08 61.6 33 78.8
Hma1.2p1_0403F.1_g145200 Hydrangea macrophylla HOM05D006648 ORTHO05D008253 2.3e-08 61.6 32 78.1
Lsat_1_v5_gn_0_10520 Lactuca sativa HOM05D006648 ORTHO05D008253 2.3e-08 61.6 32 84.4
Nn4g24907 Nelumbo nucifera HOM05D006648 ORTHO05D008253 2.3e-08 61.6 30 80.0
CARHR018460 Cardamine hirsuta HOM05D006648 ORTHO05D008253 3.0e-08 61.2 33 78.8
Eucgr.H00617 Eucalyptus grandis HOM05D006648 ORTHO05D008253 3.0e-08 61.2 32 78.1
Thhalv10007680m.g Eutrema salsugineum HOM05D006648 ORTHO05D008253 3.0e-08 61.2 33 78.8
Sp1g15930 Schrenkiella parvula HOM05D006648 ORTHO05D008253 3.0e-08 61.2 33 78.8
Sc12g0007810 Simmondsia chinensis HOM05D006648 ORTHO05D008253 3.0e-08 61.2 37 64.9
AT1G17850 Arabidopsis thaliana HOM05D006648 ORTHO05D008253 3.9e-08 60.8 33 75.8
Duzib205G0071 Durio zibethinus HOM05D006648 ORTHO05D008253 3.9e-08 60.8 31 80.6
RcHm_v2.0_Chr7g0177381 Rosa chinensis HOM05D006648 ORTHO05D008253 3.9e-08 60.8 37 67.6
Sed0021957 Sechium edule HOM05D006648 ORTHO05D008253 3.9e-08 60.8 36 72.2
Atru.chr9.364 Acer truncatum HOM05D006648 ORTHO05D008253 5.1e-08 60.5 32 78.1
Manes.02G213372 Manihot esculenta HOM05D006648 ORTHO05D008253 5.1e-08 60.5 30 83.3
ClCG10G015270 Citrullus lanatus HOM05D006648 ORTHO05D008253 6.7e-08 60.1 36 72.2
THA.LOC104810632 Tarenaya hassleriana HOM05D006648 ORTHO05D008253 6.7e-08 60.1 29 86.2
Aa31LG7G2660 Aethionema arabicum HOM05D006648 ORTHO05D008253 8.8e-08 59.7 36 69.4
MELO3C009853.2 Cucumis melo HOM05D006648 ORTHO05D008253 8.8e-08 59.7 32 75.0
Hund06714 Selenicereus undatus HOM05D006648 ORTHO05D008253 8.8e-08 59.7 42 61.9
Ciclev10020172m.g Citrus clementina HOM05D006648 ORTHO05D008253 1.1e-07 59.3 32 78.1
Aqoxy3G00019 Aquilegia oxysepala HOM05D006648 ORTHO05D008253 1.5e-07 58.9 34 73.5
Ca_17156_v3 Cicer arietinum L. HOM05D006648 ORTHO05D008253 1.5e-07 58.9 32 78.1
GSVIVG01029375001 Vitis vinifera HOM05D006648 ORTHO05D008253 1.5e-07 58.9 36 69.4
CDE04G0242 Ceratophyllum demersum HOM05D006648 ORTHO05D008253 2.6e-07 58.2 34 70.6
ATR0618G275 Amborella trichopoda HOM05D006648 ORTHO05D008253 3.3e-07 57.8 33 72.7
TWI15G0343 Tripterygium wilfordii HOM05D006648 ORTHO05D008253 5.7e-07 57.0 34 70.6
MD06G1237700 Malus domestica HOM05D006648 ORTHO05D008253 2.8e-06 54.7 32 68.8
SEGI_24482 Sequoiadendron giganteum HOM05D006648 ORTHO05D008253 4.8e-06 53.9 32 65.6
Mapoly0049s0044 Marchantia polymorpha HOM05D006648 ORTHO05D008253 8.2e-06 53.1 37 54.1
PSO384G4308 Papaver somniferum HOM05D006648 ORTHO05D008253 8.2e-06 53.1 33 66.7


User provided reference genes

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