Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 5.5e-157 557.8 314 100.0
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.1e-149 533.5 344 90.1
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 1.4e-99 367.1 358 67.0
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.1e-85 320.9 313 61.3
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.6e-84 317.0 315 61.6
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.6e-74 283.1 342 57.3
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 3.4e-74 282.7 329 60.5
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 4.9e-73 278.9 312 53.5
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 9.2e-72 274.6 354 54.8
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.2e-71 274.2 326 57.7
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 1.2e-71 274.2 327 59.3
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 3.0e-70 269.6 350 54.6
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 3.9e-70 269.2 352 52.8
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 5.1e-70 268.9 338 55.6
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.1e-69 267.7 365 52.9
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.9e-69 266.9 321 53.6
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 2.5e-69 266.5 361 52.6
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 5.6e-69 265.4 338 54.1
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.2e-68 264.2 347 51.9
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 3.6e-68 262.7 357 54.6
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 4.7e-68 262.3 340 56.5
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 6.2e-68 261.9 340 55.3
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 1.1e-67 261.2 381 51.2
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 1.8e-67 260.4 376 50.5
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 4.0e-67 259.2 354 52.8
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 1.5e-66 257.3 343 53.9
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 5.8e-66 255.4 342 52.9
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 7.6e-66 255.0 344 53.5
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 1.7e-65 253.8 370 52.4
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 1.7e-65 253.8 336 55.4
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 2.2e-65 253.4 319 55.5
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.2e-65 253.4 334 52.4
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 4.9e-65 252.3 377 50.7
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 6.4e-65 251.9 325 55.1
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.4e-65 251.9 373 49.9
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 1.9e-64 250.4 361 51.8
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 3.2e-64 249.6 355 52.4
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 3.2e-64 249.6 355 52.4
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 5.4e-64 248.8 337 53.7
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 7.1e-64 248.4 353 51.0
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 1.6e-63 247.3 367 52.3
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 1.6e-63 247.3 335 53.1
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 3.5e-63 246.1 317 55.8
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 3.5e-63 246.1 317 55.8
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 4.6e-63 245.7 368 49.2
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 4.6e-63 245.7 337 52.2
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 1.0e-62 244.6 324 54.6
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.5e-61 240.7 332 53.6
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 2.5e-61 240.0 355 51.5
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 4.3e-61 239.2 340 52.6
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.3e-60 237.7 343 48.4
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 8.1e-60 235.0 345 51.0
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.1e-59 234.6 350 50.9
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.1e-59 234.6 350 50.9
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 1.1e-59 234.6 353 49.0
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 1.4e-59 234.2 378 49.5
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.1e-59 233.0 347 49.0
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 4.0e-59 232.6 326 55.8
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 5.3e-59 232.3 356 50.6
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 9.0e-59 231.5 342 51.2
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 2.0e-58 230.3 367 48.5
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.4e-58 229.2 345 50.4
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 4.4e-58 229.2 326 53.4
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 1.3e-57 227.6 333 52.9
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 1.7e-57 227.3 364 45.6
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 2.9e-57 226.5 377 48.3
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 2.9e-57 226.5 351 51.0
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 4.9e-57 225.7 359 46.2
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 4.9e-57 225.7 347 49.6
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 8.4e-57 224.9 317 54.9
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 8.4e-57 224.9 361 50.1
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 1.9e-56 223.8 381 47.5
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 5.4e-56 222.2 335 49.9
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 7.1e-56 221.9 376 47.1
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 9.3e-56 221.5 368 48.9
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 3.5e-55 219.5 377 46.7
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 4.6e-55 219.2 339 49.3
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 2.5e-53 213.4 316 51.9
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.3e-53 212.6 363 49.0
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 7.4e-53 211.8 393 42.7
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 1.8e-51 207.2 379 44.3
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 9.0e-51 204.9 401 41.1
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.5e-47 193.0 323 47.4
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 6.0e-47 192.2 267 50.9
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 7.9e-47 191.8 316 44.9
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 1.0e-46 191.4 317 43.8
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 8.7e-46 188.3 303 49.8
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 4.3e-45 186.0 285 48.8
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 2.4e-43 180.3 393 39.7
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.2e-42 177.9 355 36.6
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 3.4e-42 176.4 318 46.5
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 2.5e-40 170.2 377 41.9
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 1.1e-37 161.4 149 59.7
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 3.3e-37 159.8 159 56.0
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 4.1e-35 152.9 198 47.5
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 2.6e-34 150.2 288 41.3
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 1.3e-33 147.9 283 47.0
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.1e-32 144.8 248 50.0
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.9e-32 144.1 126 58.7
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 4.2e-32 142.9 93 78.5
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 3.6e-31 139.8 494 31.6
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.0e-30 138.3 142 51.4
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.4e-27 127.9 116 55.2
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 6.9e-27 125.6 121 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 5.0e-25 119.4 397 29.5
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 1.2e-23 114.8 211 50.2
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 1.0e-22 111.7 252 32.1
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 8.8e-22 108.6 196 37.8
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 5.7e-21 105.9 154 45.5
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.8e-19 100.9 97 52.6
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 4.1e-19 99.8 79 73.4
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 1.5e-18 97.8 184 35.9
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 4.5e-18 96.3 118 55.9
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.3e-17 94.7 77 71.4
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.2e-15 88.2 97 47.4
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 6.1e-15 85.9 93 48.4
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-11 75.1 115 40.9
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-10 70.5 101 40.6
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-10 70.5 101 40.6
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 7.7e-10 68.9 101 39.6
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 2.2e-09 67.4 102 41.2
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.5e-09 65.9 74 48.6
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-08 65.1 101 36.6
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 1.2e-07 61.6 74 45.9
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 1.6e-07 61.2 68 48.5
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 2.7e-07 60.5 40 65.0
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-06 58.5 101 39.6
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.0e-06 57.0 101 37.6
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 4.0e-06 56.6 101 39.6
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.7e-06 55.8 96 40.6
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 8.8e-06 55.5 101 37.6
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 8.8e-06 55.5 101 37.6


User provided reference genes

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