Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g017520.1 Solanum lycopersicum HOM05D001249 ORTHO05D031248 2.7e-27 124.8 72 100.0
Sopen12g008300 Solanum pennellii HOM05D001249 ORTHO05D003440 2.7e-27 124.8 72 98.6
PGSC0003DMG400006460 Solanum tuberosum HOM05D001249 ORTHO05D003440 6.0e-27 123.6 56 100.0
Nitab4.5_0005148g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.0e-26 122.9 56 98.2
Peaxi162Scf00057g01912 Petunia axillaris HOM05D001249 ORTHO05D003440 3.9e-26 120.9 56 94.6
Peaxi162Scf63976g00001 Petunia axillaris HOM05D001249 ORTHO05D003440 3.9e-26 120.9 56 94.6
Manes.05G208200 Manihot esculenta HOM05D001249 ORTHO05D003440 1.5e-25 119.0 56 91.1
Glyma.14G037300 Glycine max HOM05D001249 ORTHO05D003440 2.5e-25 118.2 56 91.1
TPR.G11914 Trifolium pratense HOM05D001249 ORTHO05D003440 3.3e-25 117.9 56 91.1
Nitab4.5_0000348g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 4.3e-25 117.5 56 91.1
Nitab4.5_0003681g0020 Nicotiana tabacum HOM05D001249 ORTHO05D003440 4.3e-25 117.5 56 91.1
Ciclev10020871m.g Citrus clementina HOM05D001249 ORTHO05D003440 5.7e-25 117.1 56 89.3
Lju124C5T8 Lonicera japonica HOM05D001249 ORTHO05D003440 5.7e-25 117.1 56 89.3
Medtr3g045190 Medicago truncatula HOM05D001249 ORTHO05D003440 5.7e-25 117.1 56 89.3
Phvul.006G018100 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 7.4e-25 116.7 56 89.3
Potri.007G146300 Populus trichocarpa HOM05D001249 ORTHO05D003440 9.6e-25 116.3 56 87.5
PGR142G4250 Punica granatum HOM05D001249 ORTHO05D003440 9.6e-25 116.3 56 89.3
Nn1g09415 Nelumbo nucifera HOM05D001249 ORTHO05D003440 1.3e-24 115.9 56 87.5
Sc25g0002220 Simmondsia chinensis HOM05D001249 ORTHO05D003440 1.3e-24 115.9 56 89.3
Ah.07g203310 Amaranthus hybridus HOM05D001249 ORTHO05D003440 2.1e-24 115.2 56 89.3
Dinv24741 Davidia involucrata HOM05D001249 ORTHO05D003440 2.1e-24 115.2 56 89.3
Cc03_g16190 Coffea canephora HOM05D001249 ORTHO05D003440 2.8e-24 114.8 56 85.7
Glyma.20G044800 Glycine max HOM05D001249 ORTHO05D003440 2.8e-24 114.8 56 87.5
Solyc08g015690.4 Solanum lycopersicum HOM05D001249 ORTHO05D003440 2.8e-24 114.8 56 89.3
Sopen08g005800 Solanum pennellii HOM05D001249 ORTHO05D003440 2.8e-24 114.8 56 89.3
Glyma.02G277300 Glycine max HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 87.5
Gohir.A01G231800 Gossypium hirsutum HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 85.7
Gohir.D01G221900 Gossypium hirsutum HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 85.7
Gorai.002G268600 Gossypium raimondii HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 85.7
Lju470C1T4 Lonicera japonica HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 87.5
VMungo0647G1653 Vigna mungo HOM05D001249 ORTHO05D003440 3.7e-24 114.4 56 87.5
Cpa.g.sc9.242 Carica papaya HOM05D001249 ORTHO05D003440 4.8e-24 114.0 56 87.5
Lj6g0018713 Lotus japonicus HOM05D001249 ORTHO05D003440 4.8e-24 114.0 56 85.7
Medtr5g088850 Medicago truncatula HOM05D001249 ORTHO05D003440 4.8e-24 114.0 56 87.5
Phvul.008G203600 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 4.8e-24 114.0 56 85.7
Thecc.05G000700 Theobroma cacao HOM05D001249 ORTHO05D003440 4.8e-24 114.0 55 87.3
Atru.chr3.1961 Acer truncatum HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 85.7
Cfa008531 Carpinus fangiana HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 85.7
RcHm_v2.0_Chr2g0084381 Rosa chinensis HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 87.5
THA.LOC104804361 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 89.3
TPR.G16415 Trifolium pratense HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 85.7
VMungo0540G2213 Vigna mungo HOM05D001249 ORTHO05D003440 6.2e-24 113.6 56 85.7
CiPaw.02G125500 Carya illinoinensis HOM05D001249 ORTHO05D003440 8.2e-24 113.2 56 83.9
Duzib093G0930 Durio zibethinus HOM05D001249 ORTHO05D003440 8.2e-24 113.2 56 83.9
TAR362G1111 Trochodendron aralioides HOM05D001249 ORTHO05D003440 8.2e-24 113.2 56 85.7
CAN.G68.1 Capsicum annuum HOM05D001249 ORTHO05D003440 1.1e-23 112.8 56 87.5
FvH4_1g00090 Fragaria vesca HOM05D001249 ORTHO05D003440 1.1e-23 112.8 56 85.7
FAN26G0381 Fragaria x ananassa HOM05D001249 ORTHO05D003440 1.1e-23 112.8 56 85.7
FAN28G2707 Fragaria x ananassa HOM05D001249 ORTHO05D003440 1.1e-23 112.8 56 85.7
LjContig00564g0000582 Lotus japonicus HOM05D001249 ORTHO05D003440 1.1e-23 112.8 56 87.5
AUR62023689 Chenopodium quinoa HOM05D001249 ORTHO05D003440 1.4e-23 112.5 55 87.3
Lalb_Chr15g0080151 Lupinus albus HOM05D001249 ORTHO05D003440 1.4e-23 112.5 56 85.7
Sabra07G0115100 Salix brachista HOM05D001249 ORTHO05D003440 1.4e-23 112.5 56 83.9
PGSC0003DMG400013715 Solanum tuberosum HOM05D001249 ORTHO05D003440 1.4e-23 112.5 56 87.5
CANSAT56G2692 Cannabis sativa HOM05D001249 ORTHO05D003440 1.8e-23 112.1 56 83.9
CiPaw.01G202900 Carya illinoinensis HOM05D001249 ORTHO05D003440 1.8e-23 112.1 55 87.3
CDE04G1507 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 2.4e-23 111.7 56 83.9
Prupe.7G271000 Prunus persica HOM05D001249 ORTHO05D003440 2.4e-23 111.7 56 85.7
THA.LOC104802350 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 2.4e-23 111.7 56 87.5
TWI63G1312 Tripterygium wilfordii HOM05D001249 ORTHO05D003440 2.4e-23 111.7 56 87.5
Aa31LG1G25730 Aethionema arabicum HOM05D001249 ORTHO05D003440 4.0e-23 110.9 56 85.7
Lalb_Chr04g0249331 Lupinus albus HOM05D001249 ORTHO05D003440 4.0e-23 110.9 56 83.9
QL10p064706 Quercus lobata HOM05D001249 ORTHO05D003440 4.0e-23 110.9 56 82.1
QL10p064865 Quercus lobata HOM05D001249 ORTHO05D003440 4.0e-23 110.9 56 82.1
QL10p065831 Quercus lobata HOM05D001249 ORTHO05D003440 4.0e-23 110.9 56 82.1
ClCG06G010080 Citrullus lanatus HOM05D001249 ORTHO05D003440 5.3e-23 110.5 56 85.7
CsaV3_2G011930 Cucumis sativus L. HOM05D001249 ORTHO05D003440 5.3e-23 110.5 56 85.7
Zm00001eb304760 Zea mays HOM05D001249 ORTHO05D003440 5.3e-23 110.5 56 82.1
COL.COLO4_32523 Corchorus olitorius HOM05D001249 ORTHO05D003440 6.9e-23 110.2 56 83.9
Migut.N03015 Erythranthe guttata HOM05D001249 ORTHO05D003440 6.9e-23 110.2 56 83.9
HPP92_001207 Vanilla planifolia HOM05D001249 ORTHO05D003440 6.9e-23 110.2 56 83.9
DCAR_023793 Daucus carota HOM05D001249 ORTHO05D003440 9.0e-23 109.8 56 83.9
Eucgr.H00245 Eucalyptus grandis HOM05D001249 ORTHO05D003440 9.0e-23 109.8 54 87.0
MD15G1142200 Malus domestica HOM05D001249 ORTHO05D003440 9.0e-23 109.8 56 82.1
Oeu014978.1 Olea europaea HOM05D001249 ORTHO05D003440 9.0e-23 109.8 56 83.9
vmacro00731 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 1.2e-22 109.4 55 83.6
GSVIVG01038264001 Vitis vinifera HOM05D001249 ORTHO05D003440 1.2e-22 109.4 56 82.1
ATR0743G044 Amborella trichopoda HOM05D001249 ORTHO05D003440 1.5e-22 109.0 56 82.1
arahy.Tifrunner.gnm1.ann1.GD18YF Arachis hypogaea HOM05D001249 ORTHO05D003440 1.5e-22 109.0 56 82.1
MELO3C020416.2 Cucumis melo HOM05D001249 ORTHO05D003440 1.5e-22 109.0 56 83.9
Lalb_Chr10g0106081 Lupinus albus HOM05D001249 ORTHO05D003440 1.5e-22 109.0 56 82.1
Sed0022992 Sechium edule HOM05D001249 ORTHO05D003440 2.0e-22 108.6 56 83.9
MSTRG.8086 Avicennia marina HOM05D001249 ORTHO05D003440 2.6e-22 108.2 56 82.1
Sed0007404 Sechium edule HOM05D001249 ORTHO05D003440 2.6e-22 108.2 56 82.1
ECA248G2519 Erigeron canadensis HOM05D001249 ORTHO05D003440 3.4e-22 107.8 56 80.4
vmacro03772 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 3.4e-22 107.8 55 81.8
arahy.Tifrunner.gnm1.ann1.4U54KW Arachis hypogaea HOM05D001249 ORTHO05D003440 4.5e-22 107.5 56 80.4
DCAR_027489 Daucus carota HOM05D001249 ORTHO05D003440 4.5e-22 107.5 56 82.1
PSO170G3486 Papaver somniferum HOM05D001249 ORTHO05D003440 4.5e-22 107.5 56 80.4
PSO384G3429 Papaver somniferum HOM05D001249 ORTHO05D003440 4.5e-22 107.5 56 80.4
Peaxi162Scf01205g00175 Petunia axillaris HOM05D001249 ORTHO05D003440 4.5e-22 107.5 51 88.2
MD02G1000600 Malus domestica HOM05D001249 ORTHO05D003440 5.8e-22 107.1 56 82.1
Psat2g021400 Pisum sativum HOM05D001249 ORTHO05D003440 5.8e-22 107.1 56 82.1
Os07g0272300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 7.6e-22 106.7 56 78.6
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 1.0e-21 106.3 55 80.0
BcaB06g29354 Brassica carinata HOM05D001249 ORTHO05D003440 1.0e-21 106.3 56 82.1
MBI07_g27882_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.0e-21 106.3 56 80.4
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.0e-21 106.3 56 80.4
Aqoxy6G00001 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 80.4
AL4G42930 Arabidopsis lyrata HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 80.4
Carub.0004s2661 Capsella rubella HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 80.4
CARHR139220 Cardamine hirsuta HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 80.4
CDE02G4753 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 76.8
SalBow6G0898 Salvia bowleyana HOM05D001249 ORTHO05D003440 1.3e-21 105.9 56 80.4
Zm00001eb064120 Zea mays HOM05D001249 ORTHO05D003440 1.7e-21 105.5 56 80.4
BcaB06g29513 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
BcaC02g07138 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
A04p33180 Brassica napus HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
BolC4t28588H Brassica oleracea HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
BraA04t18777Z Brassica rapa HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
CAN.G207.8 Capsicum annuum HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 85.7
Hund12304 Selenicereus undatus HOM05D001249 ORTHO05D003440 2.2e-21 105.1 56 80.4
Aqoxy6G00880 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 76.8
AT2G44060 Arabidopsis thaliana HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 78.6
A03p24660 Brassica napus HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 80.4
C03p29400 Brassica napus HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 80.4
BolC3t15287H Brassica oleracea HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 80.4
BraA03t11672Z Brassica rapa HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 80.4
Os03g0843300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 2.9e-21 104.8 56 78.6
Nitab4.5_0006083g0030 Nicotiana tabacum HOM05D001249 ORTHO05D031248 3.8e-21 104.4 51 90.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 5.0e-21 104.0 56 78.6
BcaB01g03333 Brassica carinata HOM05D001249 ORTHO05D003440 6.5e-21 103.6 56 78.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 6.5e-21 103.6 56 78.6
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 6.5e-21 103.6 56 78.6
Ca_26658_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 6.5e-21 103.6 51 84.3
Thhalv10001537m.g Eutrema salsugineum HOM05D001249 ORTHO05D003440 6.5e-21 103.6 56 76.8
Sp4g26140 Schrenkiella parvula HOM05D001249 ORTHO05D003440 6.5e-21 103.6 56 78.6
SGA_v2.0_scaffold12G06226 Striga asiatica HOM05D001249 ORTHO05D003440 8.4e-21 103.2 56 80.4
SGA_v2.0_scaffold37G14908 Striga asiatica HOM05D001249 ORTHO05D003440 8.4e-21 103.2 56 80.4
AUR62002497 Chenopodium quinoa HOM05D001249 ORTHO05D003440 1.1e-20 102.8 55 76.4
HanXRQChr01g0017591 Helianthus annuus HOM05D001249 ORTHO05D003440 1.1e-20 102.8 56 75.0
ATR0225G022 Amborella trichopoda HOM05D001249 ORTHO05D003440 1.4e-20 102.4 56 75.0
CDE09G1295 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 2.5e-20 101.7 56 76.8
Nn5g29337 Nelumbo nucifera HOM05D001249 ORTHO05D003440 9.3e-20 99.8 56 73.2
Migut.G00799 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.2e-19 99.4 56 71.4
MBI16_g27589_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.6e-19 99.0 56 69.6
SEGI_02724 Sequoiadendron giganteum HOM05D001249 ORTHO05D003440 1.6e-19 99.0 56 71.4
EL10Ac3g06181 Beta vulgaris HOM05D001249 ORTHO05D003440 2.1e-19 98.6 56 75.0
Gohir.A03G218500 Gossypium hirsutum HOM05D001249 ORTHO05D003440 2.1e-19 98.6 47 89.4
Lsat_1_v5_gn_1_82580 Lactuca sativa HOM05D001249 ORTHO05D003440 2.1e-19 98.6 53 75.5
TAR376G0188 Trochodendron aralioides HOM05D001249 ORTHO05D003440 2.7e-19 98.2 56 69.6
Ca_06180_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 4.6e-19 97.4 50 82.0
ECA233G0816 Erigeron canadensis HOM05D001249 ORTHO05D003440 3.0e-18 94.7 56 66.1
Gohir.A07G233300 Gossypium hirsutum HOM05D001249 ORTHO05D003440 8.7e-18 93.2 47 85.1
Mapoly0002s0220 Marchantia polymorpha HOM05D001249 ORTHO05D003440 1.1e-17 92.8 56 67.9
PSO541G5475 Papaver somniferum HOM05D001249 ORTHO05D003440 1.1e-17 92.8 56 66.1
PSO675G8641 Papaver somniferum HOM05D001249 ORTHO05D003440 1.1e-17 92.8 56 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2490 Anthoceros agrestis HOM05D001249 ORTHO05D003440 1.3e-16 89.4 56 66.1
SMO367G0480 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 2.2e-16 88.6 56 66.1
Pp3c23_18440 Physcomitrium patens HOM05D001249 ORTHO05D003440 2.8e-16 88.2 53 71.7
Pp3c24_14840 Physcomitrium patens HOM05D001249 ORTHO05D003440 8.2e-16 86.7 53 69.8
Manes.01G009601 Manihot esculenta HOM05D001249 ORTHO05D003440 5.9e-14 80.5 51 62.7
Lju41A14T32 Lonicera japonica HOM05D001249 ORTHO05D003440 4.2e-12 74.3 35 82.9
CBR_g75560 Chara braunii HOM05D001249 ORTHO05D003440 7.2e-12 73.6 56 51.8
CBR_g39190 Chara braunii HOM05D001249 ORTHO05D003440 9.4e-12 73.2 53 52.8
Aqoxy5G02073 Aquilegia oxysepala HOM05D001249 ORTHO05D031248 2.1e-11 72.0 38 81.6
QL10p064899 Quercus lobata HOM05D001249 ORTHO05D003440 6.7e-10 67.0 40 67.5
CDE07G0014 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 8.8e-10 66.6 56 60.7
MBI10_g03654_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.5e-09 65.9 54 48.1
CBR_g55417 Chara braunii HOM05D001249 ORTHO05D003440 2.5e-09 65.1 52 50.0
arahy.Tifrunner.gnm1.ann1.L9LT8B Arachis hypogaea HOM05D001249 ORTHO05D003440 9.1e-07 56.6 26 80.8
Peaxi162Scf00057g01913 Petunia axillaris HOM05D001249 ORTHO05D306182 3.4e-06 54.7 34 79.4


User provided reference genes

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