Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 2.9e-93 346.3 365 100.0
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 2.1e-91 340.1 365 99.2
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.6e-75 287.3 318 93.1
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 2.0e-62 243.8 317 70.3
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 3.0e-58 229.9 316 74.4
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 5.9e-54 215.7 316 67.7
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 2.9e-53 213.4 316 63.9
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 3.2e-52 209.9 318 65.4
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 1.6e-51 207.6 316 62.3
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 6.1e-51 205.7 309 63.8
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 9.2e-47 191.8 317 64.7
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.7e-46 190.3 318 56.6
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.3e-45 188.0 318 56.6
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 1.7e-45 187.6 315 69.5
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.9e-45 186.8 319 64.3
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.9e-45 186.8 319 64.3
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 1.1e-44 184.9 319 67.4
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 1.6e-43 181.0 320 61.2
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 4.7e-43 179.5 319 58.3
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.4e-42 177.9 308 62.0
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 6.8e-42 175.6 318 60.1
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 8.9e-42 175.3 317 59.3
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 3.4e-41 173.3 318 57.5
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 3.4e-41 173.3 318 57.2
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 4.4e-41 172.9 319 62.7
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.4e-41 172.9 318 57.5
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 5.7e-41 172.6 317 64.0
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 5.7e-41 172.6 319 60.8
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 9.8e-41 171.8 318 57.2
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.2e-40 170.6 317 60.9
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 8.3e-40 168.7 322 58.4
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 8.3e-40 168.7 319 59.6
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.1e-39 168.3 320 64.4
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 1.1e-39 168.3 325 46.8
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 1.8e-39 167.5 320 60.0
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 2.4e-39 167.2 319 47.3
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 3.2e-39 166.8 326 58.3
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 3.2e-39 166.8 317 58.0
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 4.1e-39 166.4 255 74.1
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.1e-39 166.4 318 63.2
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 7.0e-39 165.6 311 70.7
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 1.2e-38 164.9 316 70.9
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 1.6e-38 164.5 321 61.4
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.7e-38 163.7 318 63.2
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 5.9e-38 162.5 319 64.3
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 5.9e-38 162.5 318 51.9
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 7.8e-38 162.2 319 55.2
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 3.0e-37 160.2 321 57.3
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 3.0e-37 160.2 319 62.4
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 5.0e-37 159.5 320 59.1
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 5.0e-37 159.5 317 62.8
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 6.6e-37 159.1 325 62.5
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 6.6e-37 159.1 316 63.3
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 6.6e-37 159.1 316 64.2
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 1.9e-36 157.5 314 69.7
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 2.5e-36 157.1 322 54.7
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 2.5e-36 157.1 310 64.5
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 3.3e-36 156.8 328 57.0
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 5.6e-36 156.0 318 62.3
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 5.6e-36 156.0 318 62.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 5.6e-36 156.0 322 56.2
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 7.3e-36 155.6 203 69.5
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 2.1e-35 154.1 317 63.7
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 2.8e-35 153.7 323 57.9
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.8e-35 153.7 316 62.7
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.6e-35 153.3 320 58.1
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 3.6e-35 153.3 317 55.8
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.7e-35 152.9 320 57.8
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 4.7e-35 152.9 251 53.8
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 4.7e-35 152.9 251 53.8
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 6.2e-35 152.5 320 58.8
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 6.2e-35 152.5 317 51.4
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 8.0e-35 152.1 322 65.8
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-34 151.8 320 57.8
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 1.0e-34 151.8 320 57.8
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 1.0e-34 151.8 320 57.8
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 1.0e-34 151.8 320 57.8
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 1.4e-34 151.4 318 68.2
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.8e-34 151.0 317 56.8
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.8e-34 151.0 320 57.5
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 2.3e-34 150.6 321 55.1
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 3.1e-34 150.2 330 59.1
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.1e-34 150.2 320 62.8
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 4.0e-34 149.8 318 57.2
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 5.2e-34 149.4 315 68.6
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 5.2e-34 149.4 270 64.4
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 6.8e-34 149.1 251 53.4
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 1.2e-33 148.3 320 63.1
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.5e-33 147.9 337 57.6
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 2.6e-33 147.1 320 56.9
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.3e-32 144.8 320 61.9
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.3e-32 144.8 363 42.7
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.7e-32 144.4 318 49.1
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.7e-32 144.4 298 61.4
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 2.9e-32 143.7 313 58.5
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 2.9e-32 143.7 321 66.4
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 4.9e-32 142.9 318 60.1
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 6.4e-32 142.5 320 61.6
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 6.4e-32 142.5 306 56.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 8.3e-32 142.1 321 63.2
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 8.3e-32 142.1 320 56.2
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 1.9e-31 141.0 315 62.2
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 2.4e-31 140.6 332 53.3
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 2.4e-31 140.6 332 53.3
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 3.2e-31 140.2 322 59.0
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 5.4e-31 139.4 319 64.3
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.4e-31 139.4 318 56.9
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 7.0e-31 139.0 310 67.1
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.2e-30 138.3 265 57.7
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 2.0e-30 137.5 315 61.3
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 2.0e-30 137.5 331 57.1
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.0e-30 137.5 336 57.4
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.5e-30 136.7 330 54.2
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 3.5e-30 136.7 320 60.3
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 7.8e-30 135.6 321 60.1
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 5.0e-29 132.9 319 58.6
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 6.6e-29 132.5 327 42.5
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 1.1e-28 131.7 310 64.2
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 1.5e-28 131.3 186 47.8
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.9e-28 131.0 309 61.5
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.5e-28 130.6 328 60.7
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 2.5e-28 130.6 330 56.4
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 7.3e-28 129.0 324 47.2
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 7.3e-28 129.0 211 56.4
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 7.3e-28 129.0 309 61.5
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 7.3e-28 129.0 304 71.4
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 2.8e-27 127.1 332 58.1
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 3.6e-27 126.7 311 55.6
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 4.7e-27 126.3 298 55.0
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 6.2e-27 125.9 313 57.5
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 8.1e-27 125.6 311 55.6
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 2.3e-26 124.0 298 59.4
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 3.1e-26 123.6 332 59.3
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 3.1e-26 123.6 313 52.4
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 6.8e-26 122.5 316 63.6
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 8.9e-26 122.1 322 55.0
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 1.2e-25 121.7 322 54.0
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 2.0e-25 120.9 332 56.6
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 2.0e-25 120.9 316 53.2
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 2.0e-25 120.9 321 61.1
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 2.0e-25 120.9 309 42.4
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 2.6e-25 120.6 315 54.0
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 4.4e-25 119.8 321 59.8
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 5.8e-25 119.4 200 54.5
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 5.8e-25 119.4 324 63.6
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 5.8e-25 119.4 324 63.6
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 5.8e-25 119.4 324 63.6
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 5.8e-25 119.4 316 57.6
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 5.8e-25 119.4 311 59.8
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 1.3e-24 118.2 318 56.6
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.3e-24 118.2 308 61.4
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 1.7e-24 117.9 93 59.1
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 2.2e-24 117.5 310 59.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 2.9e-24 117.1 320 60.0
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.9e-24 117.1 320 62.5
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 3.7e-24 116.7 336 45.5
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 4.9e-24 116.3 321 58.9
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 8.3e-24 115.5 332 58.4
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 8.3e-24 115.5 332 58.4
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.1e-23 115.2 163 55.2
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 1.1e-23 115.2 313 58.8
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 2.4e-23 114.0 295 55.6
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 2.4e-23 114.0 321 56.1
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 2.4e-23 114.0 312 59.9
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 3.2e-23 113.6 322 56.8
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 4.1e-23 113.2 295 55.6
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 5.4e-23 112.8 218 52.3
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 7.1e-23 112.5 318 59.1
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 1.6e-22 111.3 318 58.8
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 1.6e-22 111.3 307 60.9
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 2.1e-22 110.9 324 48.1
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 2.7e-22 110.5 313 60.4
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 1.5e-20 104.8 196 59.7
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 5.6e-20 102.8 256 69.1
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 3.6e-19 100.1 201 52.2
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.4e-18 98.2 324 58.0
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 2.9e-16 90.5 251 59.4
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 3.7e-16 90.1 239 49.0
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.5e-12 78.2 254 60.6
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 9.6e-12 75.5 229 71.2
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.1e-10 72.0 80 48.8
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 2.4e-10 70.9 327 61.2
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 5.2e-10 69.7 116 54.3
SEGI_15755 Sequoiadendron giganteum HOM05D003453 ORTHO05D004154 3.4e-09 67.0 152 57.9
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 6.4e-08 62.8 316 52.5


User provided reference genes

Program Settings