Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.7e-200 701.8 359 100.0
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.6e-168 596.3 359 85.5
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.7e-168 595.5 357 86.3
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 8.4e-162 573.9 352 83.2
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.5e-158 562.4 315 90.5
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.0e-152 541.2 362 77.9
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 3.4e-139 498.8 308 82.1
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 3.2e-137 492.3 286 87.8
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 4.1e-124 448.7 276 83.3
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.5e-107 392.5 209 97.1
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 8.3e-101 371.3 349 57.6
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.0e-96 354.8 361 53.2
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.0e-95 354.4 353 55.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 4.0e-95 352.4 350 56.0
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.5e-91 339.3 352 51.4
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 6.0e-91 338.6 351 50.7
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.9e-89 333.6 351 51.9
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 3.3e-89 332.8 360 51.9
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 9.5e-89 331.3 352 52.8
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.4e-87 327.4 214 78.0
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.3e-87 326.6 351 51.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.0e-87 325.9 360 50.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 5.2e-87 325.5 359 51.0
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.2e-86 324.3 352 51.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.0e-86 323.6 363 50.4
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.3e-85 320.9 363 51.2
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.7e-85 320.5 368 50.0
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 3.7e-85 319.3 353 50.7
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.1e-84 317.8 363 48.8
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.4e-84 317.4 353 49.6
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.9e-84 317.0 396 46.7
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 6.0e-83 312.0 354 48.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.0e-82 311.2 351 49.3
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.3e-82 310.8 351 46.4
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.7e-82 310.5 352 48.6
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 6.6e-82 308.5 350 48.6
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.1e-81 307.8 353 49.6
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.6e-81 305.4 171 91.2
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.1e-79 301.2 346 49.1
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 6.8e-79 298.5 365 46.6
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-78 297.0 350 47.7
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 2.6e-78 296.6 342 50.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 4.4e-78 295.8 348 47.1
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 9.9e-78 294.7 347 49.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.3e-77 294.3 346 49.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.9e-77 292.4 199 75.4
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 6.4e-77 292.0 353 48.2
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.1e-76 291.2 348 49.1
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.4e-76 290.8 466 40.6
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 2.4e-76 290.0 353 46.5
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 1.6e-75 287.3 353 47.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 3.5e-75 286.2 361 45.7
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 7.8e-75 285.0 347 46.7
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 8.6e-74 281.6 375 45.6
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 2.1e-72 276.9 332 48.5
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.8e-71 273.9 349 45.3
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 5.2e-71 272.3 313 48.6
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 6.8e-71 271.9 354 45.5
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.2e-70 271.2 359 44.6
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 3.4e-70 269.6 344 44.5
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 5.8e-70 268.9 346 45.4
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 3.8e-69 266.2 356 44.1
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 6.4e-69 265.4 349 44.4
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.1e-68 264.6 352 45.2
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 5.4e-68 262.3 339 45.7
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 2.7e-67 260.0 350 43.7
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.7e-66 257.3 169 80.5
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 8.7e-66 255.0 348 44.3
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.5e-65 254.2 363 42.4
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 3.3e-65 253.1 388 40.5
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.3e-64 251.1 360 42.2
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.1e-64 250.4 347 43.8
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 3.6e-64 249.6 359 42.6
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 8.1e-64 248.4 359 41.2
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.1e-63 248.1 346 42.2
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.4e-63 247.7 346 41.9
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 5.3e-63 245.7 345 43.2
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.2e-62 244.6 364 39.8
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.5e-62 244.2 347 42.4
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 4.4e-62 242.7 349 41.0
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.6e-62 241.9 347 41.8
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.3e-61 241.1 348 43.7
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.7e-61 240.7 347 41.5
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 3.8e-61 239.6 349 40.7
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 3.8e-61 239.6 350 41.1
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.4e-61 238.8 346 40.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 6.4e-61 238.8 346 41.0
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.1e-60 238.0 346 39.3
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.9e-60 237.3 349 39.3
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.9e-60 237.3 349 40.7
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 7.1e-60 235.3 389 37.3
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.2e-59 234.6 355 43.1
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.5e-59 233.0 348 39.1
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 4.6e-59 232.6 354 39.8
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 3.0e-58 229.9 349 37.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 8.7e-58 228.4 347 40.3
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.5e-57 227.6 354 41.5
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 4.3e-57 226.1 343 39.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 4.8e-56 222.6 383 39.2
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.1e-55 221.5 266 45.9
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.4e-55 221.1 206 57.8
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.8e-55 220.7 353 38.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.2e-54 218.0 334 41.0
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 2.6e-54 216.9 349 39.3
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-52 211.5 141 78.7
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 3.2e-52 209.9 312 41.7
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.6e-51 207.6 366 37.2
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.6e-51 206.1 288 43.4
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.0e-50 204.9 308 39.9
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.5e-49 200.3 274 41.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 9.0e-47 191.8 372 33.3
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.4e-44 184.5 101 94.1
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 3.2e-44 183.3 186 48.4
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 5.5e-44 182.6 313 38.7
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 7.1e-44 182.2 316 37.0
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.2e-43 181.4 363 34.7
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.9e-41 174.1 347 35.7
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 3.4e-38 163.3 276 37.7
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 5.5e-36 156.0 252 36.5
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 6.1e-35 152.5 208 45.2
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 2.8e-32 143.7 315 33.0
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-30 136.7 223 38.6
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 1.0e-29 135.2 217 38.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 1.0e-29 135.2 217 38.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 1.0e-29 135.2 217 38.7
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.5e-28 130.6 120 52.5
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 8.8e-26 122.1 207 37.7
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.6e-19 101.3 400 24.0
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.6e-19 101.3 398 26.6
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 1.4e-18 98.2 110 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 4.8e-16 89.7 198 26.8
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.2e-14 85.1 62 74.2
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 7.7e-14 82.4 94 47.9
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 5.0e-13 79.7 66 63.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.9e-12 77.8 66 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 5.2e-10 69.7 370 22.7
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 5.2e-10 69.7 198 26.8
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 3.7e-08 63.5 48 66.7
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.7e-08 63.5 105 38.1
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 9.1e-07 58.9 203 27.6
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 1.2e-06 58.5 42 69.0
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.6e-06 57.4 77 41.6
Sabra18G0129100 Salix brachista HOM05D000311 ORTHO05D000183 4.5e-06 56.6 42 66.7


User provided reference genes

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