Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 0.0e+00 1413.7 731 100.0
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 0.0e+00 1355.9 731 96.2
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 0.0e+00 1273.1 737 89.6
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 0.0e+00 1086.6 745 76.8
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 4.7e-252 874.8 738 65.3
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 9.6e-189 664.5 748 52.7
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 2.4e-187 659.8 754 52.1
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 2.2e-185 653.3 754 52.1
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 6.5e-185 651.7 754 52.3
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.0e-178 630.2 740 52.3
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 2.0e-173 613.6 725 51.7
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.5e-133 481.1 725 43.4
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 3.2e-131 473.4 764 43.8
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.8e-126 457.6 739 41.8
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 4.6e-122 443.0 772 40.4
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.3e-121 441.4 761 41.7
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.1e-119 434.1 812 39.7
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 3.1e-118 430.3 776 39.4
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.0e-118 429.9 764 40.6
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 4.9e-116 422.9 760 39.7
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.4e-115 419.5 762 40.0
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 4.6e-114 416.4 755 40.7
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.7e-113 414.5 751 40.7
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 4.0e-110 403.3 759 39.4
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 9.9e-109 398.7 780 37.4
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 9.9e-109 398.7 761 38.4
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 5.4e-107 392.9 750 38.4
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 9.2e-107 392.1 754 38.9
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 6.6e-105 386.0 721 38.3
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.1e-102 378.6 744 37.1
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 8.9e-102 375.6 739 36.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 7.1e-99 365.9 738 37.5
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 6.0e-98 362.8 776 36.9
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.1e-95 354.4 760 38.2
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.6e-95 353.6 767 37.4
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 3.6e-95 353.6 779 36.1
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 8.1e-95 352.4 760 37.2
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 2.4e-94 350.9 756 35.7
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 2.4e-94 350.9 761 36.5
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.2e-93 348.6 879 32.5
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.0e-93 347.8 708 37.4
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.9e-91 341.3 777 37.2
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 3.2e-91 340.5 782 35.2
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 6.7e-89 332.8 751 36.2
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 6.7e-89 332.8 739 36.9
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 9.6e-88 328.9 796 35.4
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 1.1e-86 325.5 782 35.8
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 6.9e-86 322.8 772 36.0
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.0e-85 321.2 779 35.8
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.9e-84 317.4 777 35.6
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 3.8e-84 317.0 746 35.8
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 6.4e-84 316.2 915 30.2
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.4e-83 314.3 780 35.6
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.6e-82 311.6 823 34.1
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 2.7e-82 310.8 751 35.2
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 6.0e-82 309.7 754 34.9
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 2.3e-81 307.8 794 33.8
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 3.9e-81 307.0 764 34.8
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 3.9e-81 307.0 775 35.2
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 3.9e-81 307.0 754 32.4
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 2.5e-80 304.3 778 35.6
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 5.6e-80 303.1 754 33.8
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 9.6e-80 302.4 778 35.1
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 6.2e-79 299.7 766 34.7
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.5e-77 295.0 757 35.3
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 2.0e-77 294.7 764 34.2
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 5.8e-77 293.1 774 33.5
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 1.0e-76 292.4 784 33.2
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 7.1e-75 286.2 768 34.5
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 1.6e-74 285.0 762 35.4
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 7.4e-72 276.2 740 32.7
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 4.5e-69 266.9 739 33.4
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 4.6e-66 256.9 730 33.8
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.1e-64 252.3 756 32.1
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 2.5e-64 251.1 743 30.1
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 4.3e-64 250.4 746 30.4
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 9.1e-62 242.7 714 33.2
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 7.7e-61 239.6 785 30.6
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 1.7e-60 238.4 703 31.0
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 1.7e-60 238.4 764 30.6
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 2.2e-60 238.0 762 31.4
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 6.5e-60 236.5 731 29.7
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 7.2e-59 233.0 821 30.6
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 9.4e-59 232.6 783 31.9
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 4.6e-58 230.3 773 29.4
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 2.2e-55 221.5 758 30.2
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 1.8e-54 218.4 806 29.0
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 2.4e-54 218.0 760 29.2
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.5e-53 215.3 750 30.0
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.5e-53 215.3 675 29.6
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.4e-53 214.2 792 29.3
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 1.0e-52 212.6 753 29.3
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 1.4e-51 208.8 733 29.5
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 6.1e-50 203.4 739 30.6
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 2.3e-49 201.4 662 30.8
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 5.2e-49 200.3 796 28.9
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 5.3e-46 190.3 297 43.1
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.6e-45 188.7 172 56.4
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 3.5e-45 187.6 703 28.3
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 4.5e-45 187.2 770 26.2
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 7.7e-45 186.4 764 28.0
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 1.0e-44 186.0 735 29.3
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 2.2e-44 184.9 793 28.9
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 3.8e-44 184.1 789 29.0
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 8.5e-44 183.0 723 29.0
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 8.5e-44 183.0 409 36.4
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 9.4e-43 179.5 724 26.8
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 2.3e-41 174.9 773 29.4
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 3.3e-40 171.0 724 25.7
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 4.8e-39 167.2 787 28.5
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 6.3e-39 166.8 793 28.6
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 1.4e-38 165.6 793 27.7
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 1.4e-38 165.6 677 28.7
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 4.1e-38 164.1 726 27.7
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.6e-37 162.2 802 28.7
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 1.9e-35 155.2 125 59.2
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 4.0e-33 147.5 568 29.8
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 3.4e-32 144.4 800 26.5
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 3.4e-32 144.4 800 26.5
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 5.9e-29 133.7 782 29.5
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.9e-28 131.3 758 25.9
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 1.1e-27 129.4 711 26.2
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 1.1e-27 129.4 711 26.2
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 1.5e-27 129.0 787 29.2
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 3.6e-26 124.4 787 28.8
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 6.8e-25 120.2 713 27.9
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.4e-24 117.9 800 27.9
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 4.9e-23 114.0 800 27.6
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 9.2e-22 109.8 825 24.7
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 1.0e-17 96.3 754 23.5
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 8.9e-17 93.2 91 52.7
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 2.7e-13 81.6 814 22.5
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 1.9e-11 75.5 229 28.4
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 5.2e-09 67.4 47 68.1
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 6.8e-09 67.0 114 40.4
HPP92_028056 Vanilla planifolia HOM05D005664 ORTHO05D006509 6.8e-09 67.0 128 40.6
Zm00001eb243360 Zea mays HOM05D019841 ORTHO05D037008 1.1e-06 59.7 186 27.4
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 4.1e-06 57.8 771 20.6
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 7.0e-06 57.0 51 49.0


User provided reference genes

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