Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g015920.2 Solanum lycopersicum HOM05D013972 ORTHO05D000687 1.8e-60 236.1 159 100.0
Sopen12g007820 Solanum pennellii HOM05D013972 ORTHO05D000687 2.9e-58 228.8 159 96.9
PGSC0003DMG400029804 Solanum tuberosum HOM05D013972 ORTHO05D000687 2.7e-51 205.7 159 88.7
Nitab4.5_0000134g0080 Nicotiana tabacum HOM05D000913 ORTHO05D000687 3.2e-36 155.6 159 62.9
PGSC0003DMG400044148 Solanum tuberosum HOM05D013972 ORTHO05D000687 1.1e-28 130.6 161 52.2
Solyc07g065927.1 Solanum lycopersicum HOM05D000913 ORTHO05D000687 3.5e-27 125.6 160 55.6
Nitab4.5_0000152g0210 Nicotiana tabacum HOM05D013972 ORTHO05D000687 1.7e-26 123.2 159 44.0
CAN.G623.49 Capsicum annuum HOM05D013972 ORTHO05D000687 6.6e-26 121.3 157 45.9
Nitab4.5_0009707g0010 Nicotiana tabacum HOM05D013972 ORTHO05D000687 3.3e-25 119.0 161 42.9
Sopen07g034120 Solanum pennellii HOM05D013972 ORTHO05D000687 2.6e-22 109.4 156 44.2
PGSC0003DMG400022261 Solanum tuberosum HOM05D013972 ORTHO05D000687 1.9e-17 93.2 136 41.9
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 4.4e-14 82.0 80 55.0
Solyc07g065923.1 Solanum lycopersicum HOM05D013972 ORTHO05D000687 8.4e-13 77.8 159 35.2
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.4e-12 77.0 80 52.5
Peaxi162Scf00058g00179 Petunia axillaris HOM05D013972 ORTHO05D000687 1.9e-12 76.6 75 54.7
SalBow8G4274 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.2e-12 75.9 76 51.3
SalBow8G4609 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.2e-12 75.9 76 51.3
SalBow8G3675 Salvia bowleyana HOM05D000913 ORTHO05D000687 9.3e-12 74.3 83 50.6
MD10G1233100 Malus domestica HOM05D000913 ORTHO05D000687 2.1e-11 73.2 74 44.6
Prupe.6G030400 Prunus persica HOM05D000913 ORTHO05D000687 4.6e-11 72.0 84 40.5
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 6.0e-11 71.6 81 49.4
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 1.0e-10 70.9 84 39.3
MD10G1233300 Malus domestica HOM05D000913 ORTHO05D000687 6.6e-10 68.2 74 41.9
Nn5g28777 Nelumbo nucifera HOM05D000913 ORTHO05D000687 6.6e-10 68.2 112 35.7
SalBow8G5506 Salvia bowleyana HOM05D000913 ORTHO05D000687 6.6e-10 68.2 75 48.0
Nn5g28779 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.1e-09 67.4 112 34.8
Nn5g28781 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.1e-09 67.4 112 34.8
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.5e-09 67.0 76 47.4
Lalb_Chr22g0353261 Lupinus albus HOM05D000913 ORTHO05D000687 3.3e-09 65.9 82 42.7
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 3.3e-09 65.9 85 37.6
Lalb_Chr22g0353251 Lupinus albus HOM05D000913 ORTHO05D000687 4.3e-09 65.5 81 43.2
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.3e-09 65.5 79 41.8
Ah.12g065180 Amaranthus hybridus HOM05D000913 ORTHO05D000687 5.6e-09 65.1 82 40.2
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 5.6e-09 65.1 75 49.3
FAN25G0550 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.6e-09 65.1 73 43.8
MD11G1039300 Malus domestica HOM05D000913 ORTHO05D000687 5.6e-09 65.1 76 43.4
RcHm_v2.0_Chr5g0075281 Rosa chinensis HOM05D000913 ORTHO05D000687 5.6e-09 65.1 81 39.5
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 7.3e-09 64.7 80 45.0
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 7.3e-09 64.7 82 43.9
arahy.Tifrunner.gnm1.ann1.J75ZHQ Arachis hypogaea HOM05D000913 ORTHO05D000687 9.6e-09 64.3 85 48.2
EL10Ac2g02868 Beta vulgaris HOM05D000913 ORTHO05D000687 9.6e-09 64.3 84 40.5
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 9.6e-09 64.3 79 41.8
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 1.3e-08 63.9 82 43.9
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 1.6e-08 63.5 74 44.6
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 1.6e-08 63.5 74 43.2
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.1e-08 63.2 75 45.3
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 2.1e-08 63.2 162 32.1
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 2.8e-08 62.8 75 44.0
CiPaw.11G201200 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.6e-08 62.4 75 42.7
Phvul.008G282300 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 3.6e-08 62.4 82 45.1
Carub.0003s2011 Capsella rubella HOM05D000913 ORTHO05D000687 4.8e-08 62.0 74 44.6
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 4.8e-08 62.0 75 45.3
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.8e-08 62.0 83 41.0
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.8e-08 62.0 81 37.0
FvH4_3g42050 Fragaria vesca HOM05D000913 ORTHO05D000687 8.1e-08 61.2 74 40.5
Prupe.6G031100 Prunus persica HOM05D000913 ORTHO05D000687 8.1e-08 61.2 69 42.0
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 1.1e-07 60.8 85 48.2
FvH4_3g42060 Fragaria vesca HOM05D000913 ORTHO05D000687 1.1e-07 60.8 80 40.0
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.1e-07 60.8 83 39.8
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 1.1e-07 60.8 82 43.9
RcHm_v2.0_Chr5g0075291 Rosa chinensis HOM05D000913 ORTHO05D000687 1.1e-07 60.8 75 41.3
MD10G1341200 Malus domestica HOM05D000913 ORTHO05D000687 1.4e-07 60.5 66 39.4
Sc11g0006740 Simmondsia chinensis HOM05D000913 ORTHO05D000687 1.4e-07 60.5 82 39.0
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 2.4e-07 59.7 84 41.7
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 2.4e-07 59.7 75 38.7
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 2.4e-07 59.7 76 40.8
Atru.chr2.3866 Acer truncatum HOM05D000913 ORTHO05D000687 3.1e-07 59.3 75 45.3
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 3.1e-07 59.3 82 36.6
SalBow8G3635 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.1e-07 59.3 70 38.6
SalBow8G5025 Salvia bowleyana HOM05D000913 ORTHO05D000687 3.1e-07 59.3 70 38.6
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 4.0e-07 58.9 83 37.3
FAN11G3382 Fragaria x ananassa HOM05D000913 ORTHO05D000687 4.0e-07 58.9 78 39.7
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.0e-07 58.9 75 34.7
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.0e-07 58.9 84 40.5
Manes.03G137300 Manihot esculenta HOM05D000913 ORTHO05D000687 4.0e-07 58.9 76 44.7
Sp3g18210 Schrenkiella parvula HOM05D000913 ORTHO05D000687 4.0e-07 58.9 88 38.6
arahy.Tifrunner.gnm1.ann1.EN7GHH Arachis hypogaea HOM05D000913 ORTHO05D000687 5.3e-07 58.5 75 36.0
arahy.Tifrunner.gnm1.ann1.JV1GEI Arachis hypogaea HOM05D000913 ORTHO05D000687 5.3e-07 58.5 75 36.0
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.3e-07 58.5 84 40.5
Os02g0582600 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 5.3e-07 58.5 74 45.9
Prupe.6G030600 Prunus persica HOM05D000913 ORTHO05D000687 5.3e-07 58.5 81 39.5
PSO675G3882 Papaver somniferum HOM05D000913 ORTHO05D000687 6.9e-07 58.2 76 38.2
Prupe.6G030900 Prunus persica HOM05D000913 ORTHO05D000687 6.9e-07 58.2 79 39.2
RcHm_v2.0_Chr3g0484311 Rosa chinensis HOM05D000913 ORTHO05D000687 6.9e-07 58.2 75 38.7
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 9.0e-07 57.8 85 45.9
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 9.0e-07 57.8 85 34.1
FvH4_3g42100 Fragaria vesca HOM05D000913 ORTHO05D000687 9.0e-07 57.8 74 39.2
FAN16G3426 Fragaria x ananassa HOM05D000913 ORTHO05D000687 9.0e-07 57.8 79 38.0
Glyma.07G098500 Glycine max HOM05D000913 ORTHO05D000687 9.0e-07 57.8 161 29.2
Nn5g28780 Nelumbo nucifera HOM05D000913 ORTHO05D000687 9.0e-07 57.8 72 38.9
Oeu049442.1 Olea europaea HOM05D000913 ORTHO05D000687 9.0e-07 57.8 77 40.3
QL08p001929 Quercus lobata HOM05D000913 ORTHO05D000687 9.0e-07 57.8 81 44.4
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 9.0e-07 57.8 75 42.7
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 9.0e-07 57.8 84 40.5
Zm00001eb080130 Zea mays HOM05D000913 ORTHO05D000687 9.0e-07 57.8 83 38.6
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.2e-06 57.4 84 39.3
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.2e-06 57.4 75 34.7
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.2e-06 57.4 84 40.5
Gohir.A04G008700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.5e-06 57.0 79 39.2
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 1.5e-06 57.0 81 38.3
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 1.5e-06 57.0 85 44.7
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 1.5e-06 57.0 84 38.1
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 2.0e-06 56.6 75 42.7
FAN21G0520 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.0e-06 56.6 73 37.0
Glyma.09G179800 Glycine max HOM05D000913 ORTHO05D000687 2.0e-06 56.6 74 39.2
MD03G1038400 Malus domestica HOM05D000913 ORTHO05D000687 2.0e-06 56.6 74 39.2
unitig_46.g18288 Utricularia gibba HOM05D061876 ORTHO05D051521 2.0e-06 56.6 75 44.0
arahy.Tifrunner.gnm1.ann1.B2ZTLF Arachis hypogaea HOM05D000913 ORTHO05D000687 2.6e-06 56.2 79 41.8
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 2.6e-06 56.2 79 40.5
FvH4_3g42110 Fragaria vesca HOM05D000913 ORTHO05D000687 2.6e-06 56.2 74 37.8
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 2.6e-06 56.2 84 34.5
QL08p002158 Quercus lobata HOM05D000913 ORTHO05D000687 2.6e-06 56.2 73 35.6
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 2.6e-06 56.2 74 41.9
Sc11g0006750 Simmondsia chinensis HOM05D000913 ORTHO05D000687 2.6e-06 56.2 78 39.7
arahy.Tifrunner.gnm1.ann1.E2IRB4 Arachis hypogaea HOM05D000913 ORTHO05D000687 3.4e-06 55.8 74 35.1
BolC1t05541H Brassica oleracea HOM05D000191 ORTHO05D000122 3.4e-06 55.8 81 38.3
FAN16G0947 Fragaria x ananassa HOM05D000913 ORTHO05D000687 3.4e-06 55.8 72 36.1
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 3.4e-06 55.8 81 38.3
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 3.4e-06 55.8 85 40.0
arahy.Tifrunner.gnm1.ann1.IVAP43 Arachis hypogaea HOM05D000913 ORTHO05D000687 4.5e-06 55.5 75 37.3
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 4.5e-06 55.5 86 41.9
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.5e-06 55.5 75 36.0
HanXRQChr14g0430241 Helianthus annuus HOM05D000913 ORTHO05D000687 4.5e-06 55.5 74 37.8
MBI16_g31488_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.5e-06 55.5 65 40.0
MD03G1038900 Malus domestica HOM05D000913 ORTHO05D000687 4.5e-06 55.5 80 38.8
RcHm_v2.0_Chr5g0000231 Rosa chinensis HOM05D000913 ORTHO05D000687 4.5e-06 55.5 73 35.6
BcaB04g21280 Brassica carinata HOM05D000913 ORTHO05D000687 5.8e-06 55.1 80 38.8
CANSAT56G3334 Cannabis sativa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 73 41.1
AUR62026813 Chenopodium quinoa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 70 41.4
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 5.8e-06 55.1 73 43.8
Duzib268G1294 Durio zibethinus HOM05D000913 ORTHO05D000687 5.8e-06 55.1 84 34.5
Duzib268G1311 Durio zibethinus HOM05D000913 ORTHO05D000687 5.8e-06 55.1 84 39.3
FAN21G1287 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 85 38.8
Hma1.2p1_0048F.1_g028140 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 5.8e-06 55.1 75 36.0
Oeu049450.1 Olea europaea HOM05D000913 ORTHO05D000687 5.8e-06 55.1 74 40.5
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 5.8e-06 55.1 84 38.1
QL08p002202 Quercus lobata HOM05D000913 ORTHO05D000687 5.8e-06 55.1 74 36.5
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 5.8e-06 55.1 81 39.5
GSVIVG01014795001 Vitis vinifera HOM05D000913 ORTHO05D000687 5.8e-06 55.1 75 40.0
Zm00001eb080210 Zea mays HOM05D000913 ORTHO05D000687 5.8e-06 55.1 83 41.0
CANSAT11G0550 Cannabis sativa HOM05D000913 ORTHO05D000687 7.6e-06 54.7 75 36.0
MD09G1133200 Malus domestica HOM05D000913 ORTHO05D000687 7.6e-06 54.7 84 36.9
PSO017G1569 Papaver somniferum HOM05D000913 ORTHO05D000687 7.6e-06 54.7 76 38.2
Psat1g171760 Pisum sativum HOM05D000913 ORTHO05D000687 7.6e-06 54.7 75 36.0
TPR.G31615 Trifolium pratense HOM05D000913 ORTHO05D000687 7.6e-06 54.7 71 38.0
vmacro11625 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 7.6e-06 54.7 85 41.2
GSVIVG01014802001 Vitis vinifera HOM05D000913 ORTHO05D000687 7.6e-06 54.7 65 43.1
arahy.Tifrunner.gnm1.ann1.U821IZ Arachis hypogaea HOM05D000913 ORTHO05D000687 9.9e-06 54.3 74 35.1
CSS0028038 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 9.9e-06 54.3 76 36.8
Zm00001eb080170 Zea mays HOM05D000913 ORTHO05D000687 9.9e-06 54.3 84 38.1


User provided reference genes

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