Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.5e-239 831.6 403 100.0
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 5.1e-192 674.5 321 98.8
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 3.6e-161 572.0 311 83.6
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 8.0e-161 570.9 322 81.4
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 8.0e-161 570.9 321 81.6
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 1.5e-159 566.6 398 69.8
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 3.4e-159 565.5 401 69.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 7.5e-159 564.3 313 83.7
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 4.9e-158 561.6 313 84.3
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.4e-157 559.3 344 76.5
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.6e-156 556.6 314 81.5
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 4.5e-156 555.1 385 69.1
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 7.7e-156 554.3 316 80.4
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 7.7e-156 554.3 309 81.6
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 7.7e-156 554.3 372 71.5
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 1.3e-155 553.5 321 78.8
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 6.6e-155 551.2 352 75.3
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 6.6e-155 551.2 352 75.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-154 550.4 321 81.9
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 1.1e-154 550.4 313 85.3
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.5e-154 550.1 322 78.0
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.9e-154 549.7 390 68.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 2.5e-154 549.3 324 77.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 7.3e-154 547.7 313 80.2
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 9.5e-154 547.4 322 82.0
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 2.1e-153 546.2 338 76.0
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 3.6e-153 545.4 353 73.4
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 8.0e-153 544.3 322 77.3
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 8.0e-153 544.3 395 66.3
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 1.4e-152 543.5 321 76.9
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 5.2e-152 541.6 311 79.7
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 6.8e-152 541.2 319 78.4
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 6.8e-152 541.2 305 82.3
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 3.4e-151 538.9 330 75.2
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 4.4e-151 538.5 310 78.4
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 4.4e-151 538.5 345 72.8
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 5.7e-151 538.1 327 77.4
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 5.7e-151 538.1 313 78.6
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.5e-151 537.7 329 74.8
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 1.7e-150 536.6 329 75.4
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-150 536.6 329 75.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.2e-150 536.2 372 69.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.9e-150 535.8 313 78.3
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.9e-150 535.8 313 79.6
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 3.7e-150 535.4 333 75.7
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.7e-150 535.4 322 76.1
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.1e-149 533.9 322 76.1
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.1e-149 533.9 313 79.2
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 1.4e-149 533.5 322 75.5
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.4e-149 533.5 319 77.1
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.4e-149 533.5 319 76.8
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.4e-149 533.5 319 76.5
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.8e-149 533.1 323 76.2
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 1.8e-149 533.1 307 78.5
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 3.2e-149 532.3 310 78.1
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 4.1e-149 531.9 318 76.4
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 5.4e-149 531.6 321 76.9
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 9.2e-149 530.8 319 76.2
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 2.0e-148 529.6 334 73.7
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 2.7e-148 529.3 381 66.4
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 7.8e-148 527.7 313 76.7
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 7.8e-148 527.7 314 81.2
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.3e-147 526.9 342 72.8
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.3e-147 526.9 327 74.0
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 2.3e-147 526.2 318 77.0
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.0e-147 525.8 390 65.9
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 5.0e-147 525.0 389 66.6
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 5.0e-147 525.0 326 75.5
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 6.6e-147 524.6 305 78.7
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 6.6e-147 524.6 334 73.1
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 8.6e-147 524.2 314 77.1
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 8.6e-147 524.2 310 77.4
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 1.1e-146 523.9 327 73.1
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 3.3e-146 522.3 309 79.0
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 3.3e-146 522.3 325 74.2
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 4.3e-146 521.9 312 77.9
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 4.3e-146 521.9 370 67.3
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.3e-146 521.9 384 66.9
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 7.3e-146 521.2 310 75.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 1.6e-145 520.0 322 76.4
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 1.6e-145 520.0 367 69.2
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 1.0e-144 517.3 310 75.8
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.4e-144 516.9 315 75.2
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 3.1e-144 515.8 309 77.3
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 5.2e-144 515.0 309 76.7
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.2e-143 513.8 305 76.4
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.5e-143 513.5 310 75.2
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 2.6e-143 512.7 309 76.4
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 2.6e-143 512.7 309 76.7
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 3.4e-143 512.3 308 76.3
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.8e-143 511.5 389 65.6
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 7.5e-143 511.1 309 76.1
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 7.5e-143 511.1 314 74.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 9.8e-143 510.8 313 76.4
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.2e-142 509.6 313 76.0
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.9e-142 509.2 309 76.1
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 3.2e-141 505.8 322 75.5
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.2e-141 505.8 317 73.5
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 7.0e-141 504.6 306 76.1
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.3e-139 500.4 313 74.1
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 1.7e-139 500.0 343 69.4
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.2e-135 487.3 350 67.4
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 2.4e-133 479.6 322 66.8
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 7.1e-133 478.0 304 72.7
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 8.6e-131 471.1 304 71.1
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 4.9e-126 455.3 310 67.1
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.2e-124 450.7 313 68.4
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 2.7e-124 449.5 302 66.9
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.3e-123 447.2 307 69.4
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.3e-123 446.4 341 65.1
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 2.3e-123 446.4 386 60.4
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.8e-121 439.5 293 68.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 3.1e-120 436.0 290 67.2
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.8e-116 421.4 509 47.5
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 5.1e-115 418.7 313 67.4
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 2.8e-113 412.9 302 62.3
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 6.2e-113 411.8 307 59.3
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 6.2e-113 411.8 302 59.9
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.4e-104 383.3 311 57.2
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 9.9e-103 377.9 212 82.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 1.0e-94 351.3 211 76.8
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 6.5e-94 348.6 251 66.5
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 5.5e-93 345.5 198 78.8
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.2e-92 344.4 243 67.1
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 3.7e-89 332.8 313 58.8
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.5e-82 310.8 176 78.4
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.8e-81 306.6 186 75.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 6.3e-81 305.4 249 63.5
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 6.7e-75 285.4 302 46.4
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 1.6e-47 194.5 208 46.2
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 1.4e-40 171.4 150 53.3
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.0e-38 165.2 99 80.8
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 5.0e-38 162.9 87 80.5
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.4e-33 146.0 103 68.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.6e-29 132.9 91 68.1
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 5.6e-29 132.9 325 31.1
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 1.6e-28 131.3 78 74.4
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.7e-28 129.8 312 29.2
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.4e-26 123.6 73 75.3
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.1e-24 118.6 79 73.4
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 7.8e-23 112.5 64 82.8
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 3.2e-16 90.5 184 31.5
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 7.3e-13 79.3 312 26.9
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 1.4e-11 75.1 41 75.6
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.2e-10 72.0 49 71.4
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.3e-09 68.6 42 76.2
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.2e-09 67.8 48 60.4


User provided reference genes

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