Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g014090.2 Solanum lycopersicum HOM05D004843 ORTHO05D005833 0.0e+00 1271.9 629 100.0
Sopen12g005870 Solanum pennellii HOM05D004843 ORTHO05D005833 0.0e+00 1262.7 629 99.2
CAN.G765.5 Capsicum annuum HOM05D004843 ORTHO05D005833 2.5e-302 1041.6 629 82.7
Nitab4.5_0007508g0020 Nicotiana tabacum HOM05D004843 ORTHO05D005833 3.2e-297 1024.6 629 80.9
Nitab4.5_0003077g0040 Nicotiana tabacum HOM05D004843 ORTHO05D005833 2.9e-282 974.9 628 78.0
Peaxi162Scf00000g02614 Petunia axillaris HOM05D004843 ORTHO05D005833 1.6e-219 766.5 624 64.3
Oeu024378.1 Olea europaea HOM05D004843 ORTHO05D005833 3.8e-194 682.2 628 57.0
Cc05_g11520 Coffea canephora HOM05D004843 ORTHO05D005833 9.2e-172 607.8 600 54.5
MSTRG.12883 Avicennia marina HOM05D004843 ORTHO05D005833 4.6e-171 605.5 621 53.1
Lj1C835G2 Lonicera japonica HOM05D004843 ORTHO05D005833 3.1e-167 592.8 593 53.8
Actinidia35229 Actinidia chinensis HOM05D004843 ORTHO05D005833 1.7e-157 560.5 631 49.0
Oeu061997.2 Olea europaea HOM05D004843 ORTHO05D005833 2.2e-157 560.1 625 51.0
CSS0025192 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 2.9e-157 559.7 636 48.1
Oeu061325.2 Olea europaea HOM05D004843 ORTHO05D005833 4.9e-157 558.9 523 56.8
Dinv20222 Davidia involucrata HOM05D004843 ORTHO05D005833 1.3e-154 550.8 584 50.5
SGA_v2.0_scaffold70G23704 Striga asiatica HOM05D004843 ORTHO05D005833 6.6e-154 548.5 630 48.9
CiPaw.08G115600 Carya illinoinensis HOM05D004843 ORTHO05D005833 9.9e-150 534.6 624 47.6
Hma1.2p1_0416F.1_g148560 Hydrangea macrophylla HOM05D004843 ORTHO05D005833 1.6e-147 527.3 661 44.8
GSVIVG01014249001 Vitis vinifera HOM05D004843 ORTHO05D005833 3.5e-147 526.2 600 47.0
Cfa019615 Carpinus fangiana HOM05D004843 ORTHO05D005833 4.2e-140 502.7 624 45.4
vmacro09509 Vaccinium macrocarpon HOM05D004843 ORTHO05D005833 9.3e-140 501.5 670 43.6
TAR627G0485 Trochodendron aralioides HOM05D004843 ORTHO05D005833 1.1e-137 494.6 630 44.0
TWI38G0787 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 1.3e-136 491.1 620 44.2
DCAR_021007 Daucus carota HOM05D004843 ORTHO05D005833 2.1e-136 490.3 629 43.9
Rhsim04G0023600 Rhododendron simsii HOM05D004843 ORTHO05D005833 9.0e-135 485.0 696 41.4
Sed0025158 Sechium edule HOM05D004843 ORTHO05D005833 1.2e-134 484.6 613 44.5
Lsat_1_v5_gn_5_128660 Lactuca sativa HOM05D004843 ORTHO05D005833 7.6e-134 481.9 623 45.3
QL11p026708 Quercus lobata HOM05D004843 ORTHO05D005833 8.4e-133 478.4 668 41.9
Migut.H01969 Erythranthe guttata HOM05D004843 ORTHO05D005833 8.7e-130 468.4 635 43.0
Nn1g06340 Nelumbo nucifera HOM05D004843 ORTHO05D005833 1.4e-127 461.1 630 41.9
PGR031G2553 Punica granatum HOM05D004843 ORTHO05D005833 1.2e-126 458.0 589 42.3
Lj3g0014260 Lotus japonicus HOM05D004843 ORTHO05D005833 4.5e-126 456.1 620 42.9
Glyma.12G227600 Glycine max HOM05D004843 ORTHO05D005833 7.6e-126 455.3 590 44.4
Glyma.13G272600 Glycine max HOM05D004843 ORTHO05D005833 1.4e-124 451.1 624 42.9
MELO3C016086.2 Cucumis melo HOM05D004843 ORTHO05D005833 3.2e-124 449.9 614 42.2
Prupe.4G172200 Prunus persica HOM05D004843 ORTHO05D005833 1.6e-123 447.6 620 42.4
RcHm_v2.0_Chr6g0312691 Rosa chinensis HOM05D004843 ORTHO05D005833 1.6e-123 447.6 635 42.5
SalBow7G4166 Salvia bowleyana HOM05D004843 ORTHO05D005833 1.6e-123 447.6 507 48.3
CsaV3_4G008440 Cucumis sativus L. HOM05D004843 ORTHO05D005833 1.3e-122 444.5 626 41.9
Duzib268G0207 Durio zibethinus HOM05D004843 ORTHO05D005833 2.5e-121 440.3 590 43.7
Phvul.005G067200 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 2.5e-121 440.3 631 41.7
RcHm_v2.0_Chr5g0031851 Rosa chinensis HOM05D004843 ORTHO05D005833 5.7e-121 439.1 657 41.2
VMungo1080G1831 Vigna mungo HOM05D004843 ORTHO05D005833 2.8e-120 436.8 628 41.7
ClCG07G009890 Citrullus lanatus HOM05D004843 ORTHO05D005833 4.8e-120 436.0 622 42.0
Ciclev10019192m.g Citrus clementina HOM05D004843 ORTHO05D005833 6.3e-120 435.6 600 41.7
Potri.012G106300 Populus trichocarpa HOM05D004843 ORTHO05D005833 8.2e-120 435.3 650 39.8
HanXRQChr10g0302381 Helianthus annuus HOM05D004843 ORTHO05D005833 4.1e-119 433.0 595 43.0
FvH4_3g19060 Fragaria vesca HOM05D004843 ORTHO05D005833 1.2e-118 431.4 629 42.0
Eucgr.F03287 Eucalyptus grandis HOM05D004843 ORTHO05D005833 3.4e-118 429.9 621 42.7
Lj1g0026777 Lotus japonicus HOM05D004843 ORTHO05D005833 4.5e-118 429.5 591 41.8
FAN25G1696 Fragaria x ananassa HOM05D004843 ORTHO05D005833 1.7e-117 427.6 628 41.9
DCAR_031588 Daucus carota HOM05D004843 ORTHO05D005833 3.8e-117 426.4 585 41.9
Manes.15G090500 Manihot esculenta HOM05D004843 ORTHO05D005833 1.4e-116 424.5 642 40.2
MD10G1064700 Malus domestica HOM05D004843 ORTHO05D005833 7.2e-116 422.2 594 41.2
Gohir.A04G036900 Gossypium hirsutum HOM05D004843 ORTHO05D005833 2.6e-113 413.7 569 43.4
Sabra12G0078800 Salix brachista HOM05D004843 ORTHO05D005833 2.6e-113 413.7 696 36.5
Psat5g240000 Pisum sativum HOM05D004843 ORTHO05D005833 2.8e-112 410.2 588 41.2
Aqoxy4G00544 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 3.7e-112 409.8 540 40.6
MD03G1237200 Malus domestica HOM05D004843 ORTHO05D005833 6.3e-112 409.1 592 40.4
Gohir.D05G347266 Gossypium hirsutum HOM05D004843 ORTHO05D005833 1.8e-111 407.5 590 42.0
Gorai.009G374700 Gossypium raimondii HOM05D004843 ORTHO05D005833 2.4e-111 407.1 590 42.5
Cpa.g.sc131.81 Carica papaya HOM05D004843 ORTHO05D005833 2.0e-110 404.1 612 40.0
SalBow7G4326 Salvia bowleyana HOM05D004843 ORTHO05D005833 8.5e-109 398.7 475 46.9
arahy.Tifrunner.gnm1.ann1.60B7R0 Arachis hypogaea HOM05D004843 ORTHO05D005833 1.2e-107 394.8 615 38.9
TPR.G29644 Trifolium pratense HOM05D004843 ORTHO05D005833 3.6e-107 393.3 628 40.4
FAN11G0804 Fragaria x ananassa HOM05D004843 ORTHO05D005833 6.1e-107 392.5 629 39.9
EL10Ac4g08285 Beta vulgaris HOM05D004843 ORTHO05D005833 3.9e-106 389.8 602 39.7
Lalb_Chr25g0286141 Lupinus albus HOM05D004843 ORTHO05D005833 1.1e-105 388.3 615 39.3
AUR62036128 Chenopodium quinoa HOM05D004843 ORTHO05D005833 7.4e-105 385.6 594 39.7
arahy.Tifrunner.gnm1.ann1.G1PXE9 Arachis hypogaea HOM05D004843 ORTHO05D005833 2.2e-104 384.0 574 40.1
CAN.G349.3 Capsicum annuum HOM05D004843 ORTHO05D005833 1.8e-103 380.9 268 72.8
CSS0012812 Camellia sinensis var. sinensis HOM05D004843 ORTHO05D005833 3.1e-103 380.2 440 47.0
Sc03g0010280 Simmondsia chinensis HOM05D004843 ORTHO05D005833 1.2e-99 368.2 599 38.7
Medtr2g078390 Medicago truncatula HOM05D004843 ORTHO05D005833 1.4e-98 364.8 635 37.3
AUR62019511 Chenopodium quinoa HOM05D004843 ORTHO05D005833 5.2e-90 336.3 546 40.7
CiPaw.11G165700 Carya illinoinensis HOM05D004843 ORTHO05D005833 1.5e-89 334.7 636 36.9
AUR62026744 Chenopodium quinoa HOM05D004843 ORTHO05D005833 3.4e-89 333.6 508 41.7
Hund13862 Selenicereus undatus HOM05D004843 ORTHO05D005833 9.8e-89 332.0 685 34.2
PSO210G0781 Papaver somniferum HOM05D004843 ORTHO05D005833 1.0e-85 322.0 595 35.5
Glyma.13G009900 Glycine max HOM05D004843 ORTHO05D005833 1.3e-85 321.6 516 37.2
Haze_09370 Corylus avellana HOM05D004843 ORTHO05D005833 3.8e-85 320.1 421 43.0
PSO832G1805 Papaver somniferum HOM05D004843 ORTHO05D005833 1.9e-84 317.8 596 35.6
THA.LOC104798752 Tarenaya hassleriana HOM05D004843 ORTHO05D005833 3.7e-80 303.5 607 35.3
unitig_26.g10042 Utricularia gibba HOM05D004843 ORTHO05D005833 4.5e-78 296.6 449 42.3
Phvul.005G068700 Phaseolus vulgaris HOM05D004843 ORTHO05D005833 5.0e-77 293.1 468 38.7
Aa31LG6G6390 Aethionema arabicum HOM05D000944 ORTHO05D003581 1.7e-72 278.1 579 32.8
Os06g0244100 Oryza sativa ssp. japonica HOM05D004843 ORTHO05D005833 1.7e-72 278.1 555 33.7
Oeu018948.1 Olea europaea HOM05D004843 ORTHO05D005833 1.4e-71 275.0 298 52.0
Zm00001eb280030 Zea mays HOM05D004843 ORTHO05D005833 4.1e-71 273.5 546 33.5
ATR0165G025 Amborella trichopoda HOM05D004843 ORTHO05D005833 1.2e-70 271.9 580 34.1
CDE10G0946 Ceratophyllum demersum HOM05D004843 ORTHO05D005833 4.6e-70 270.0 443 38.1
CARHR043430 Cardamine hirsuta HOM05D004843 ORTHO05D005833 2.3e-69 267.7 603 31.5
Thecc.07G102200 Theobroma cacao HOM05D004843 ORTHO05D005833 4.3e-68 263.5 288 46.9
TWI31G0686 Tripterygium wilfordii HOM05D004843 ORTHO05D005833 3.6e-67 260.4 548 33.6
Carub.0001s4239 Capsella rubella HOM05D004843 ORTHO05D005833 2.3e-66 257.7 632 31.8
ECA234G3172 Erigeron canadensis HOM05D004843 ORTHO05D005833 3.1e-66 257.3 327 44.6
AT1G53200 Arabidopsis thaliana HOM05D004843 ORTHO05D005833 3.4e-65 253.8 578 32.2
AL1G61600 Arabidopsis lyrata HOM05D004843 ORTHO05D005833 4.4e-65 253.4 611 31.9
Ca_15018_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 4.4e-65 253.4 413 39.2
SEGI_17777 Sequoiadendron giganteum HOM05D004843 ORTHO05D005833 2.2e-64 251.1 563 31.1
Sp1g39780 Schrenkiella parvula HOM05D004843 ORTHO05D005833 4.9e-64 250.0 584 33.2
Thhalv10011326m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 7.0e-63 246.1 606 31.2
C06p14590 Brassica napus HOM05D004843 ORTHO05D005833 3.5e-62 243.8 604 30.8
BcaB02g10938 Brassica carinata HOM05D004843 ORTHO05D005833 7.8e-62 242.7 591 31.3
BcaC08g44060 Brassica carinata HOM05D004843 ORTHO05D005833 6.6e-61 239.6 604 30.5
BolC6t36637H Brassica oleracea HOM05D004843 ORTHO05D005833 1.5e-60 238.4 587 30.7
BraA05t20741Z Brassica rapa HOM05D004843 ORTHO05D005833 1.9e-60 238.0 609 30.4
A05p18490 Brassica napus HOM05D004843 ORTHO05D005833 4.3e-60 236.9 609 30.4
CAN.G349.2 Capsicum annuum HOM05D004843 ORTHO05D005833 2.3e-58 231.1 140 77.9
Aqoxy7G02743 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 1.7e-56 224.9 229 46.3
Atru.chr2.138 Acer truncatum HOM05D004843 ORTHO05D005833 3.7e-56 223.8 218 49.5
MBI02_g30880_MAGBIO Magnolia biondii HOM05D004843 ORTHO05D005833 3.2e-55 220.7 426 36.4
Thhalv10028227m.g Eutrema salsugineum HOM05D004843 ORTHO05D005833 2.1e-54 218.0 593 30.4
HPP92_010831 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.7e-53 214.9 477 31.7
HPP92_010833 Vanilla planifolia HOM05D004843 ORTHO05D005833 1.7e-53 214.9 392 36.0
Thecc.07G102000 Theobroma cacao HOM05D004843 ORTHO05D005833 6.6e-53 213.0 250 44.4
Oeu038157.2 Olea europaea HOM05D004843 ORTHO05D005833 2.2e-48 198.0 248 48.0
Ca_04025_v3 Cicer arietinum L. HOM05D004843 ORTHO05D005833 9.2e-47 192.6 334 37.1
Oeu027285.1 Olea europaea HOM05D004843 ORTHO05D005833 3.3e-44 184.1 164 59.8
DCAR_032123 Daucus carota HOM05D004843 ORTHO05D005833 5.6e-44 183.3 175 50.9
Atru.chr2.140 Acer truncatum HOM05D004843 ORTHO05D005833 1.4e-39 168.7 198 45.5
Thecc.07G102300 Theobroma cacao HOM05D004843 ORTHO05D005833 7.1e-39 166.4 207 45.4
Pp3c12_9280 Physcomitrium patens HOM05D004843 ORTHO05D005833 3.0e-37 161.0 567 25.7
A06p01130 Brassica napus HOM05D004843 ORTHO05D005833 1.5e-36 158.7 276 36.2
BcaC08g43511 Brassica carinata HOM05D004843 ORTHO05D005833 8.1e-35 152.9 469 30.3
Aa31sc1038G10 Aethionema arabicum HOM05D004843 ORTHO05D005833 3.1e-34 151.0 464 28.7
C06p08970 Brassica napus HOM05D004843 ORTHO05D005833 2.1e-30 138.3 234 36.3
Thecc.07G101600 Theobroma cacao HOM05D004843 ORTHO05D005833 7.9e-30 136.3 169 42.6
Mapoly0139s0008 Marchantia polymorpha HOM05D004843 ORTHO05D005833 4.3e-28 130.6 577 25.3
Thecc.07G101400 Theobroma cacao HOM05D004843 ORTHO05D005833 4.3e-28 130.6 177 39.5
BolC6t35976H Brassica oleracea HOM05D004843 ORTHO05D005833 1.4e-26 125.6 421 29.9
Oeu029262.1 Olea europaea HOM05D004843 ORTHO05D005833 1.3e-21 109.0 106 56.6
AagrBONN_evm.TU.Sc2ySwM_228.3860 Anthoceros agrestis HOM05D004843 ORTHO05D005833 3.3e-20 104.4 443 23.3
SHI27676 Sapria himalayana HOM05D004843 ORTHO05D005833 2.1e-19 101.7 368 24.5
BraA06t23340Z Brassica rapa HOM05D004843 ORTHO05D005833 6.2e-19 100.1 168 36.9
SHI27679 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-17 95.5 109 44.0
Oeu052598.1 Olea europaea HOM05D004843 ORTHO05D005833 3.8e-16 90.9 232 30.2
AagrBONN_evm.TU.Sc2ySwM_228.3857 Anthoceros agrestis HOM05D004843 ORTHO05D005833 1.0e-13 82.8 455 21.3
unitig_26.g10043 Utricularia gibba HOM05D004843 ORTHO05D005833 9.7e-12 76.3 84 48.8
Aqoxy7G02744 Aquilegia oxysepala HOM05D004843 ORTHO05D005833 2.4e-10 71.6 66 45.5
Oeu018912.1 Olea europaea HOM05D004843 ORTHO05D005833 1.3e-08 65.9 47 66.0
Atru.chr2.139 Acer truncatum HOM05D004843 ORTHO05D005833 7.9e-06 56.6 48 54.2


User provided reference genes

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