Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 0.0e+00 1676.8 862 100.0
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 0.0e+00 1657.9 863 98.8
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 0.0e+00 1622.4 863 97.1
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 0.0e+00 1523.5 864 91.6
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1464.9 848 89.7
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 0.0e+00 1456.0 859 87.9
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 0.0e+00 1411.4 848 87.3
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1168.3 864 70.4
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 0.0e+00 1167.9 864 70.3
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 0.0e+00 1126.3 865 67.9
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 0.0e+00 1124.0 857 69.0
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 0.0e+00 1122.1 864 67.1
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 0.0e+00 1117.4 864 68.6
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 0.0e+00 1114.8 866 67.0
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 0.0e+00 1107.8 864 67.9
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 0.0e+00 1104.7 877 66.0
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 0.0e+00 1097.4 864 65.9
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 0.0e+00 1085.1 860 65.5
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 0.0e+00 1081.6 827 68.8
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 0.0e+00 1080.9 863 66.5
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 0.0e+00 1077.4 863 65.7
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 5.9e-312 1074.3 867 65.5
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 2.6e-310 1068.5 863 65.0
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 1.7e-309 1065.8 862 66.1
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 2.9e-309 1065.1 862 64.7
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 6.4e-309 1063.9 862 65.9
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 6.0e-307 1057.4 863 64.3
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 1.0e-306 1056.6 861 64.6
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 1.3e-306 1056.2 862 64.7
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 5.1e-306 1054.3 862 64.4
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 8.7e-306 1053.5 864 64.4
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 1.1e-305 1053.1 864 65.6
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 2.5e-305 1052.0 835 66.8
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 3.3e-305 1051.6 864 64.1
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.3e-305 1051.2 863 64.1
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 5.6e-305 1050.8 869 64.0
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 7.4e-305 1050.4 865 64.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 3.7e-304 1048.1 861 64.1
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 2.4e-303 1045.4 863 64.1
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 2.0e-302 1042.3 865 64.0
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 4.5e-302 1041.2 866 64.0
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.3e-301 1039.6 863 63.8
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 4.9e-301 1037.7 864 63.4
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 7.1e-300 1033.9 863 63.6
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 9.3e-300 1033.5 864 64.5
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 1.3e-298 1029.6 862 63.5
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 6.7e-298 1027.3 871 61.3
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 2.5e-297 1025.4 873 62.9
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 3.3e-297 1025.0 803 66.9
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 1.1e-295 1020.0 867 61.0
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 9.0e-295 1016.9 877 61.6
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 7.6e-294 1013.8 870 62.2
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 7.6e-294 1013.8 862 63.1
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 2.9e-293 1011.9 864 63.3
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 6.5e-293 1010.7 869 62.4
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 5.1e-290 1001.1 864 62.0
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 6.7e-290 1000.7 862 62.2
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 5.7e-289 997.7 863 61.0
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 5.7e-289 997.7 875 61.5
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 3.1e-287 991.9 864 60.3
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 6.9e-287 990.7 862 61.3
Gohir.D09G003000 Gossypium hirsutum HOM05D006510 ORTHO05D008171 1.9e-284 982.6 863 61.3
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 1.9e-284 982.6 873 62.0
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 5.5e-284 981.1 917 58.3
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 5.5e-284 981.1 871 60.3
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 3.6e-283 978.4 868 59.9
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 5.1e-282 974.5 873 60.5
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 6.7e-282 974.2 874 60.8
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 8.8e-282 973.8 866 59.7
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.5e-281 973.0 870 60.0
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.5e-281 973.0 865 57.8
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 2.0e-281 972.6 870 60.6
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.3e-280 969.9 866 59.8
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 9.1e-279 963.8 869 58.9
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 4.5e-278 961.4 868 60.3
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 2.2e-277 959.1 870 59.7
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 3.6e-275 951.8 859 59.7
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 6.1e-275 951.0 869 59.0
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 3.9e-274 948.3 874 58.4
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.5e-273 946.4 801 63.7
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 3.3e-273 945.3 847 60.1
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 7.4e-273 944.1 871 59.0
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 1.7e-272 943.0 803 62.6
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 1.1e-271 940.3 859 59.7
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 6.5e-269 931.0 861 56.7
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 9.1e-263 910.6 832 59.9
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 2.2e-261 906.0 822 59.6
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 2.2e-261 906.0 843 58.7
FAN09G2536 Fragaria x ananassa HOM05D006510 ORTHO05D008171 1.4e-255 886.7 746 63.1
VMungo1127G1883 Vigna mungo HOM05D006510 ORTHO05D008171 2.5e-252 875.9 750 62.9
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 3.0e-250 869.0 848 56.0
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 5.4e-239 831.6 861 51.8
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 1.0e-234 817.4 859 53.8
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 3.7e-232 808.9 867 50.2
arahy.Tifrunner.gnm1.ann1.H5IL2E Arachis hypogaea HOM05D006510 ORTHO05D008171 3.2e-223 779.2 644 63.8
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 1.6e-219 766.9 812 53.9
Dinv07684 Davidia involucrata HOM05D006510 ORTHO05D008171 8.1e-219 764.6 684 61.7
Zm00001eb297610 Zea mays HOM05D006510 ORTHO05D008171 6.7e-197 691.8 749 50.7
SEGI_27047 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 4.6e-166 589.3 730 47.1
TAR629G2876 Trochodendron aralioides HOM05D006510 ORTHO05D008171 3.3e-164 583.2 519 60.9
SalBow7G4578 Salvia bowleyana HOM05D006510 ORTHO05D008171 3.1e-162 576.6 435 69.0
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 1.0e-133 481.9 835 36.0
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 1.4e-133 481.5 870 35.9
SMO164G0050 Selaginella moellendorffii HOM05D006510 ORTHO05D008171 1.6e-129 468.0 849 35.6
Cpa.g.sc52.162 Carica papaya HOM05D006510 ORTHO05D008171 5.1e-96 356.7 309 59.5
CBR_g35046 Chara braunii HOM05D006510 ORTHO05D008171 3.4e-92 344.0 990 29.2
Cpa.g.sc52.161 Carica papaya HOM05D006510 ORTHO05D008171 2.8e-46 191.4 189 58.2
Dinv07685 Davidia involucrata HOM05D006510 ORTHO05D008171 5.0e-27 127.5 97 67.0
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 3.2e-26 124.8 146 48.6
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 2.2e-22 112.1 56 98.2
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.7e-22 111.3 56 94.6
MCO09G591 Micromonas commoda HOM05D006510 ORTHO05D008171 8.6e-19 100.1 728 22.8
unitig_46.g18270 Utricularia gibba HOM05D006510 ORTHO05D008171 1.0e-16 93.2 65 66.2
VMungo1127G1894 Vigna mungo HOM05D006510 ORTHO05D008171 5.2e-16 90.9 65 66.2
Cre11.g479200 Chlamydomonas reinhardtii HOM05D006510 ORTHO05D008171 1.2e-15 89.7 913 20.0
Cpa.g.c45723 Carica papaya HOM05D006510 ORTHO05D008171 7.5e-15 87.0 63 63.5
HanXRQChr09g0251831 Helianthus annuus HOM05D006510 ORTHO05D008171 2.2e-14 85.5 57 71.9
Hund07777 Selenicereus undatus HOM05D006510 ORTHO05D008171 2.0e-12 79.0 66 59.1
Lsat_1_v5_gn_9_51101 Lactuca sativa HOM05D003114 ORTHO05D003519 6.1e-09 67.4 48 64.6
BraA03t11594Z Brassica rapa HOM05D006510 ORTHO05D008171 8.0e-09 67.0 97 51.5
BcaB01g03423 Brassica carinata HOM05D001990 ORTHO05D002033 2.3e-08 65.5 106 44.3
arahy.Tifrunner.gnm1.ann1.JPYC3C Arachis hypogaea HOM05D006510 ORTHO05D008171 6.4e-06 57.4 41 61.0
SEGI_32298 Sequoiadendron giganteum HOM05D006510 ORTHO05D008171 6.4e-06 57.4 50 48.0


User provided reference genes

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