Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 3.0e-121 438.7 252 100.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 6.2e-119 431.0 252 98.4
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 8.9e-118 427.2 252 97.6
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.3e-100 370.2 255 86.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.8e-97 359.8 266 80.5
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 6.0e-90 334.7 253 82.2
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 2.4e-86 322.8 238 75.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.8e-84 315.5 247 73.3
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 1.8e-81 306.6 248 65.7
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 3.0e-81 305.8 236 69.9
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 6.7e-81 304.7 241 63.9
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.7e-81 304.7 238 70.6
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 1.5e-80 303.5 237 65.0
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.5e-80 302.8 240 65.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 5.7e-80 301.6 247 63.6
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.3e-79 300.4 236 70.8
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 2.8e-79 299.3 253 65.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 8.2e-79 297.7 243 63.4
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 3.1e-78 295.8 250 69.6
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.1e-78 295.4 260 66.2
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 2.0e-77 293.1 261 65.1
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 5.9e-77 291.6 240 65.8
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.3e-76 290.4 238 61.3
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 3.8e-76 288.9 239 65.3
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 1.1e-75 287.3 237 70.5
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.9e-75 286.6 241 68.0
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 3.2e-75 285.8 254 61.0
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 4.2e-75 285.4 250 61.6
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.2e-74 283.9 238 67.2
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 2.1e-74 283.1 238 61.3
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 2.7e-74 282.7 238 62.6
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 3.6e-74 282.3 239 61.1
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.8e-73 280.0 239 63.6
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 3.9e-73 278.9 237 59.5
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 5.1e-73 278.5 241 61.8
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 8.8e-73 277.7 238 67.6
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 8.8e-73 277.7 240 67.5
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.3e-72 275.8 242 66.9
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.3e-72 275.4 244 60.7
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 1.3e-71 273.9 241 67.6
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.3e-71 273.9 242 61.2
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.3e-71 273.9 238 62.6
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.7e-71 273.5 239 66.9
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 6.3e-71 271.6 238 63.4
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 6.3e-71 271.6 238 63.4
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 6.3e-71 271.6 241 61.8
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 8.2e-71 271.2 238 67.2
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 8.2e-71 271.2 238 67.6
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.1e-70 269.2 240 65.0
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 6.9e-70 268.1 238 66.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 6.9e-70 268.1 238 66.8
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 9.1e-70 267.7 255 60.4
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 9.1e-70 267.7 240 65.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-69 267.3 238 66.0
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 2.0e-69 266.5 238 60.1
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 3.4e-69 265.8 238 66.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.4e-69 265.8 236 65.7
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 4.5e-69 265.4 238 58.0
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 5.9e-69 265.0 238 66.4
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 7.7e-69 264.6 238 67.2
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 7.7e-69 264.6 242 58.7
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.3e-68 263.8 238 66.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 1.7e-68 263.5 240 65.8
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 2.2e-68 263.1 238 57.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.2e-68 263.1 241 61.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.8e-68 262.3 244 65.6
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 5.0e-68 261.9 238 63.9
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.5e-68 261.5 238 65.5
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 6.5e-68 261.5 238 65.5
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 6.5e-68 261.5 251 64.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.1e-67 260.8 238 60.1
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 2.5e-67 259.6 238 65.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 4.2e-67 258.8 238 60.1
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 5.5e-67 258.5 241 58.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 9.4e-67 257.7 241 58.5
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 1.6e-66 256.9 244 57.4
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.1e-66 256.5 243 55.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.6e-66 255.8 248 61.7
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.7e-66 255.4 235 63.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 4.4e-64 248.8 249 53.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 7.4e-64 248.1 250 64.0
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.7e-63 246.9 240 56.2
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.6e-61 239.6 189 75.7
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 8.5e-60 234.6 240 58.8
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.1e-59 234.2 240 56.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.4e-59 233.8 240 58.8
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.5e-59 231.9 221 61.5
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.2e-58 230.7 240 58.3
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.2e-58 230.7 351 47.6
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 3.6e-58 229.2 197 58.9
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.6e-56 223.0 241 52.7
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 4.4e-56 222.2 233 56.2
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.3e-55 220.7 245 51.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 5.3e-54 215.3 272 52.2
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 1.6e-53 213.8 247 52.2
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.6e-53 213.0 240 52.9
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 7.7e-53 211.5 235 61.3
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.4e-49 200.7 240 47.1
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-49 199.9 240 47.1
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 2.0e-48 196.8 251 46.2
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-47 194.1 241 44.8
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.7e-44 183.7 240 43.8
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.7e-42 176.4 242 43.0
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.7e-42 176.4 242 43.0
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 3.6e-42 176.0 164 52.4
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.0e-41 172.9 247 43.3
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 4.0e-41 172.6 237 46.4
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.2e-40 171.0 168 61.3
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.4e-40 169.5 164 51.2
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.4e-40 169.5 164 51.2
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 3.4e-40 169.5 153 60.8
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.1e-38 164.5 169 50.3
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 9.1e-38 161.4 243 39.9
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 7.7e-37 158.3 134 62.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.3e-36 156.8 236 48.3
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.4e-30 137.5 238 34.5
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 1.0e-28 131.3 236 44.9
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 9.5e-27 124.8 132 53.8
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.2e-26 124.4 241 33.2
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 8.0e-26 121.7 241 34.4
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 3.1e-25 119.8 124 50.8
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-20 104.0 80 65.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 5.6e-19 99.0 104 51.9
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.1e-17 94.7 171 35.1
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.3e-12 77.0 175 32.6
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 5.1e-12 75.9 132 37.1
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 5.1e-12 75.9 132 37.1
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.5e-11 73.6 132 36.4
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.5e-11 73.6 132 36.4
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 9.5e-11 71.6 132 35.6
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 2.8e-10 70.1 40 77.5
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 4.7e-10 69.3 125 35.2
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.1e-09 66.6 45 60.0
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 8.9e-09 65.1 57 56.1
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 3.7e-07 59.7 275 27.6
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.3e-07 58.5 35 74.3
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.3e-07 58.5 35 74.3
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.3e-07 58.5 35 74.3
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.3e-07 58.5 35 74.3
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 8.3e-07 58.5 35 74.3
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 1.1e-06 58.2 169 30.2
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.4e-06 57.0 35 71.4
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 4.1e-06 56.2 46 54.3
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.1e-06 56.2 72 45.8
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 5.4e-06 55.8 209 32.1


User provided reference genes

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