Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.6e-84 317.0 319 100.0
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 1.2e-79 300.8 327 93.3
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.8e-78 297.0 172 89.0
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 4.1e-75 285.8 172 84.3
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.8e-70 270.4 172 77.9
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 3.0e-70 269.6 172 79.1
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 3.9e-70 269.2 172 79.1
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 6.7e-70 268.5 171 78.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 8.8e-70 268.1 172 77.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.1e-69 267.7 172 78.5
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.1e-69 267.7 172 78.5
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 2.0e-69 266.9 172 77.9
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.0e-69 266.9 172 77.9
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.3e-69 266.2 172 76.7
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 4.4e-69 265.8 172 77.3
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 5.7e-69 265.4 172 78.5
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 9.7e-69 264.6 172 76.7
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.2e-68 263.5 172 75.6
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 3.7e-68 262.7 168 77.4
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 3.7e-68 262.7 173 77.5
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 6.3e-68 261.9 221 66.1
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.4e-67 260.8 168 76.8
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 2.4e-67 260.0 172 75.0
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 2.4e-67 260.0 172 75.0
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 2.4e-67 260.0 172 74.4
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 3.1e-67 259.6 168 76.2
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-67 259.6 168 76.2
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.1e-67 259.6 172 74.4
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.1e-67 259.6 172 74.4
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 3.1e-67 259.6 168 76.8
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 5.3e-67 258.8 168 76.2
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 7.0e-67 258.5 172 76.7
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.0e-67 258.5 168 76.2
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 7.0e-67 258.5 168 76.2
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 7.0e-67 258.5 172 73.8
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 9.1e-67 258.1 172 75.0
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 2.6e-66 256.5 172 73.8
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.6e-66 256.5 172 74.4
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 4.5e-66 255.8 172 73.8
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 4.5e-66 255.8 168 76.2
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 4.5e-66 255.8 171 75.4
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 5.9e-66 255.4 172 74.4
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 7.7e-66 255.0 168 74.4
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 7.7e-66 255.0 168 75.6
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.0e-65 254.6 165 75.8
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.3e-65 254.2 171 76.0
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 1.7e-65 253.8 168 75.6
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 2.2e-65 253.4 168 74.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 3.8e-65 252.7 172 75.6
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 5.0e-65 252.3 168 75.0
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 1.5e-64 250.8 172 72.7
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 2.7e-63 246.5 171 70.2
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 4.7e-63 245.7 169 73.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 6.1e-63 245.4 172 76.7
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 6.1e-63 245.4 172 72.1
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 6.1e-63 245.4 172 72.1
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 1.0e-62 244.6 172 73.8
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 2.3e-62 243.4 165 72.7
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 1.1e-61 241.1 172 69.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 2.0e-61 240.4 172 70.9
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 3.3e-61 239.6 172 70.9
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.4e-61 239.2 169 72.2
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 4.4e-61 239.2 169 72.2
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.8e-60 236.5 205 64.4
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 8.2e-60 235.0 172 73.8
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.4e-59 234.2 172 66.3
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.8e-59 233.8 172 66.9
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.7e-58 229.9 171 65.5
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.7e-58 229.9 171 65.5
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.7e-58 229.9 171 65.5
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.7e-58 229.9 171 65.5
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.7e-58 229.9 171 65.5
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.5e-58 229.6 193 65.8
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 5.9e-58 228.8 171 64.9
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 1.0e-57 228.0 171 65.5
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.7e-57 227.3 171 65.5
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.7e-57 227.3 171 65.5
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 2.2e-57 226.9 168 68.5
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 2.5e-56 223.4 169 68.6
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 5.5e-56 222.2 170 67.1
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 7.2e-56 221.9 167 64.7
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.2e-55 221.1 150 74.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 4.7e-55 219.2 200 57.5
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 4.0e-54 216.1 196 59.2
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.5e-53 214.2 145 74.5
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.5e-53 214.2 163 65.0
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 4.4e-53 212.6 156 66.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 6.3e-52 208.8 160 69.4
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.4e-51 206.8 148 73.0
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 2.7e-50 203.4 171 60.8
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 6.5e-49 198.7 150 68.0
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 5.5e-48 195.7 165 59.4
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 5.5e-48 195.7 156 64.7
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 3.6e-47 193.0 170 58.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 1.8e-46 190.7 168 57.1
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.4e-43 180.3 149 61.1
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.5e-42 176.0 131 65.6
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 8.9e-38 161.8 118 71.2
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 2.3e-33 147.1 72 90.3
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.7e-28 129.8 65 89.2
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 5.4e-27 125.9 67 82.1
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 5.6e-24 115.9 168 39.9
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 9.5e-24 115.2 92 64.1
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 1.6e-23 114.4 93 68.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 3.1e-22 110.2 108 54.6
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 3.1e-22 110.2 108 54.6
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.0e-22 109.8 65 70.8
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 1.1e-19 101.7 171 33.9
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 3.2e-19 100.1 65 81.5
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.7e-18 97.1 65 78.5
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 1.0e-17 95.1 62 80.6
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.7e-17 94.4 66 78.8
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 3.3e-16 90.1 124 43.5
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 1.3e-12 78.2 50 84.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 7.1e-11 72.4 64 64.1
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.0e-09 68.6 40 87.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.3e-09 68.2 48 66.7
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 5.6e-08 62.8 67 46.3
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 5.6e-08 62.8 37 86.5
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 6.2e-07 59.3 32 81.2
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-06 57.0 64 48.4
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 5.2e-06 56.2 49 71.4


User provided reference genes

Program Settings