Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 2.0e-46 188.7 96 100.0
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 3.8e-45 184.5 96 97.9
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 3.8e-45 184.5 96 96.9
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 3.6e-35 151.4 96 82.3
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 1.0e-34 149.8 96 81.2
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 7.8e-30 133.7 76 89.5
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 8.6e-29 130.2 96 71.9
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 8.6e-21 103.6 77 68.8
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 3.3e-20 101.7 77 68.8
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 5.6e-20 100.9 94 59.6
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 9.5e-20 100.1 85 65.9
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 1.6e-19 99.4 94 56.4
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 3.6e-19 98.2 64 78.1
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.7e-19 97.8 91 60.4
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 4.7e-19 97.8 91 60.4
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 8.1e-19 97.1 64 76.6
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.1e-18 96.7 64 76.6
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 1.1e-18 96.7 81 63.0
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.3e-18 95.5 64 76.6
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 2.3e-18 95.5 64 76.6
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.1e-18 95.1 64 76.6
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 4.0e-18 94.7 64 71.9
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 4.0e-18 94.7 64 75.0
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 1.2e-17 93.2 70 67.1
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 3.4e-17 91.7 64 71.9
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 4.4e-17 91.3 67 67.2
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 5.8e-17 90.9 61 77.0
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 5.8e-17 90.9 64 71.9
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 7.6e-17 90.5 64 68.8
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 9.9e-17 90.1 64 73.4
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 1.3e-16 89.7 64 68.8
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 1.3e-16 89.7 70 67.1
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 1.7e-16 89.4 62 71.0
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 2.2e-16 89.0 83 60.2
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 2.2e-16 89.0 67 64.2
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 2.9e-16 88.6 85 57.6
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 3.7e-16 88.2 64 68.8
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 8.3e-16 87.0 77 58.4
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 1.1e-15 86.7 64 68.8
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 1.4e-15 86.3 80 57.5
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 2.4e-15 85.5 64 67.2
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 2.4e-15 85.5 64 67.2
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 7.1e-15 84.0 59 72.9
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 7.1e-15 84.0 60 68.3
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 7.1e-15 84.0 67 64.2
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 7.1e-15 84.0 82 56.1
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 9.2e-15 83.6 64 65.6
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 9.2e-15 83.6 64 68.8
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 9.2e-15 83.6 64 67.2
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 2.1e-14 82.4 55 74.5
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 2.1e-14 82.4 72 58.3
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 2.7e-14 82.0 97 52.6
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.7e-14 82.0 76 56.6
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 2.7e-14 82.0 84 52.4
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 3.5e-14 81.6 59 69.5
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 3.5e-14 81.6 64 65.6
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 4.6e-14 81.3 57 70.2
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 6.0e-14 80.9 59 67.8
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 1.3e-13 79.7 90 48.9
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.3e-13 79.7 64 67.2
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 2.3e-13 79.0 64 64.1
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 2.3e-13 79.0 73 56.2
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 2.3e-13 79.0 59 64.4
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 3.9e-13 78.2 63 60.3
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 5.1e-13 77.8 63 60.3
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 8.6e-13 77.0 63 60.3
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 8.6e-13 77.0 63 60.3
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 8.6e-13 77.0 68 58.8
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.1e-12 76.6 62 61.3
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.1e-12 76.6 62 61.3
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 1.9e-12 75.9 63 60.3
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 3.3e-12 75.1 63 58.7
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 3.3e-12 75.1 57 59.6
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.3e-12 74.7 90 47.8
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 5.6e-12 74.3 64 60.9
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 1.2e-11 73.2 63 57.1
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 1.6e-11 72.8 67 53.7
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 4.7e-11 71.2 63 55.6
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 6.2e-11 70.9 63 55.6
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 6.2e-11 70.9 81 49.4
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 8.1e-11 70.5 61 60.7
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 8.1e-11 70.5 76 50.0
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 4.0e-10 68.2 76 51.3
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 4.0e-10 68.2 54 63.0
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 5.2e-10 67.8 75 52.0
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 1.3e-08 63.2 47 66.0
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.3e-08 63.2 70 51.4
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 2.9e-08 62.0 55 58.2
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 2.9e-08 62.0 49 59.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 4.9e-08 61.2 58 55.2
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.1e-07 60.1 63 50.8
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.1e-07 60.1 63 50.8
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 2.4e-07 58.9 46 58.7
Atru.chr2.2826 Acer truncatum HOM05D007448 ORTHO05D009392 3.2e-07 58.5 60 53.3
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.4e-07 57.8 66 48.5
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.2e-06 56.6 46 60.9
Pp3c3_18440 Physcomitrium patens HOM05D007448 ORTHO05D009392 4.6e-06 54.7 62 46.8
Mapoly0162s0010 Marchantia polymorpha HOM05D007448 ORTHO05D009392 6.0e-06 54.3 92 34.8
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 6.0e-06 54.3 58 46.6
Hund02207 Selenicereus undatus HOM05D007448 ORTHO05D009392 6.0e-06 54.3 46 63.0


User provided reference genes

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