Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 6.8e-137 491.1 340 100.0
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 7.8e-125 451.1 340 93.8
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 1.0e-124 450.7 340 90.9
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.7e-76 288.5 344 66.6
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 9.0e-73 278.1 345 69.9
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.0e-72 276.9 372 59.1
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 6.1e-69 265.4 368 67.1
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 6.3e-66 255.4 367 63.5
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.6e-64 250.0 369 59.9
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 3.4e-64 249.6 364 62.9
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 2.9e-63 246.5 370 60.0
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 1.6e-61 240.7 350 65.1
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 2.7e-61 240.0 368 47.0
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 3.6e-61 239.6 382 56.0
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 1.8e-57 227.3 387 53.0
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 3.1e-57 226.5 387 45.0
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 7.0e-57 225.3 363 55.6
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 2.0e-56 223.8 385 44.9
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 2.9e-55 219.9 373 54.2
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 1.9e-54 217.2 388 54.4
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 1.9e-54 217.2 383 44.6
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.2e-54 216.5 387 54.5
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 3.2e-54 216.5 389 44.7
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 4.2e-54 216.1 387 56.1
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 5.5e-54 215.7 385 52.7
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.2e-53 214.5 383 43.1
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 3.6e-53 213.0 383 42.6
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 4.7e-53 212.6 383 49.1
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 6.1e-53 212.2 383 42.3
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 1.4e-52 211.1 384 56.0
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 1.4e-52 211.1 367 43.9
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 5.2e-52 209.1 388 43.3
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 8.8e-52 208.4 383 48.6
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.1e-51 208.0 379 42.2
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.0e-51 207.2 376 51.9
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 3.3e-51 206.5 372 42.5
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 3.3e-51 206.5 372 42.5
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 7.5e-51 205.3 380 48.7
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 9.7e-51 204.9 362 54.1
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.8e-50 203.4 374 51.1
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 3.7e-50 203.0 387 47.5
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 3.7e-50 203.0 376 42.0
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.8e-49 200.7 385 46.8
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 4.1e-49 199.5 387 44.2
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 4.1e-49 199.5 416 39.7
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 5.3e-49 199.1 369 50.9
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 7.0e-49 198.7 385 47.3
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 7.0e-49 198.7 375 54.9
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 7.0e-49 198.7 438 42.9
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 4.5e-48 196.1 340 53.5
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 1.3e-47 194.5 369 50.9
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 2.2e-47 193.7 381 50.4
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 1.1e-46 191.4 368 48.6
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 1.9e-46 190.7 389 51.9
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 2.5e-46 190.3 389 40.6
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 2.5e-46 190.3 380 53.9
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 1.6e-45 187.6 382 51.3
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 2.7e-45 186.8 386 52.1
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 1.8e-44 184.1 388 42.0
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 5.2e-44 182.6 374 40.1
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 6.8e-44 182.2 390 51.3
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 6.8e-44 182.2 394 44.9
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 6.8e-44 182.2 380 40.8
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 8.8e-44 181.8 429 43.8
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 3.4e-43 179.9 378 54.8
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 4.4e-43 179.5 366 42.6
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 5.7e-43 179.1 382 44.5
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.2e-42 177.2 347 40.6
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 4.8e-42 176.0 388 54.1
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 6.3e-42 175.6 390 40.0
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.4e-41 173.7 376 48.7
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 3.1e-41 173.3 372 38.7
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 5.4e-41 172.6 380 53.9
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.0e-40 170.6 385 50.1
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 2.0e-40 170.6 375 39.7
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 5.9e-40 169.1 353 46.2
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 7.7e-40 168.7 365 38.9
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 7.7e-40 168.7 330 41.2
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.3e-39 167.9 369 54.5
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 6.5e-39 165.6 379 49.1
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 5.5e-38 162.5 414 37.9
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 7.2e-38 162.2 372 38.2
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 9.4e-38 161.8 385 46.0
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.7e-37 160.2 359 39.0
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.8e-36 157.5 389 36.2
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 4.0e-36 156.4 359 46.0
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 5.2e-36 156.0 390 47.4
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 8.8e-36 155.2 370 48.4
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 1.5e-35 154.5 376 38.3
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 1.5e-35 154.5 389 35.2
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 4.4e-35 152.9 359 52.4
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 9.8e-35 151.8 372 44.4
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 1.7e-34 151.0 400 38.0
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 1.1e-33 148.3 371 38.5
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 1.4e-33 147.9 370 45.4
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 1.8e-33 147.5 385 50.1
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.4e-33 147.1 349 42.7
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 3.1e-33 146.7 368 44.3
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 3.1e-33 146.7 384 36.2
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 4.1e-33 146.4 368 54.6
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 5.4e-33 146.0 349 45.6
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 7.0e-33 145.6 373 38.6
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.2e-32 144.8 365 44.9
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 2.7e-32 143.7 343 46.4
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 7.7e-32 142.1 344 52.3
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 1.7e-31 141.0 359 48.2
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 3.8e-31 139.8 385 35.1
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 8.6e-31 138.7 235 43.8
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-30 138.3 307 38.8
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.9e-30 137.5 362 44.2
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 4.3e-30 136.3 388 35.8
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 5.6e-30 136.0 365 43.6
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 5.6e-30 136.0 354 53.1
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 5.6e-30 136.0 349 53.9
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 1.2e-29 134.8 356 43.5
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 1.6e-29 134.4 347 46.1
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 6.1e-29 132.5 372 34.7
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 5.2e-28 129.4 361 45.2
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 8.9e-28 128.6 346 46.5
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 1.5e-27 127.9 363 44.4
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 3.4e-27 126.7 359 44.3
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 1.7e-26 124.4 356 51.7
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 2.9e-26 123.6 361 42.7
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 3.7e-26 123.2 346 40.2
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 4.9e-26 122.9 348 44.0
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 1.4e-25 121.3 360 43.3
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 1.8e-25 120.9 349 34.7
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 1.8e-25 120.9 345 39.4
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 1.8e-25 120.9 345 39.4
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 2.4e-25 120.6 351 35.9
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 9.2e-25 118.6 367 49.9
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 1.2e-24 118.2 342 48.0
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.6e-24 117.9 346 40.5
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 2.7e-24 117.1 348 41.4
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 6.6e-23 112.5 365 50.4
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 1.5e-22 111.3 374 34.0
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 4.3e-22 109.8 379 45.4
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 1.8e-20 104.4 308 42.2
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 2.3e-20 104.0 349 43.3
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 3.1e-20 103.6 349 34.1
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 5.2e-20 102.8 357 45.1
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 6.8e-20 102.4 347 32.6
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 2.6e-19 100.5 214 50.9
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 7.5e-19 99.0 339 45.4
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 1.7e-18 97.8 344 39.0
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 2.2e-18 97.4 337 45.1
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 6.4e-18 95.9 85 65.9
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.1e-17 95.1 367 35.1
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 3.2e-17 93.6 336 51.2
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 3.2e-17 93.6 336 51.2
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 7.0e-17 92.4 212 39.6
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 2.3e-15 87.4 192 43.8
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 1.9e-14 84.3 87 57.5
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 2.2e-10 70.9 158 41.1
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 2.9e-10 70.5 406 35.5
PGSC0003DMG400007194 Solanum tuberosum HOM05D004052 ORTHO05D004694 4.9e-10 69.7 81 56.8
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 2.4e-09 67.4 104 47.1
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 2.7e-08 63.9 81 50.6
Lalb_Chr19g0137441 Lupinus albus HOM05D000666 ORTHO05D001727 7.8e-08 62.4 126 36.5
Nn2g10660 Nelumbo nucifera HOM05D000666 ORTHO05D001727 1.7e-07 61.2 118 40.7
RcHm_v2.0_Chr3g0468851 Rosa chinensis HOM05D000666 ORTHO05D001727 3.0e-07 60.5 99 41.4
Os01g0757600 Oryza sativa ssp. japonica HOM05D004052 ORTHO05D004694 3.9e-07 60.1 259 29.3
FAN14G2440 Fragaria x ananassa HOM05D000666 ORTHO05D001727 6.6e-07 59.3 99 40.4
CDE09G1432 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 8.6e-07 58.9 98 43.9
Lalb_Chr03g0027061 Lupinus albus HOM05D000666 ORTHO05D001727 8.6e-07 58.9 119 36.1
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 8.6e-07 58.9 443 31.8
FAN09G4646 Fragaria x ananassa HOM05D000666 ORTHO05D001727 2.5e-06 57.4 109 36.7
Thecc.09G261500 Theobroma cacao HOM05D000666 ORTHO05D001727 2.5e-06 57.4 114 39.5
Actinidia19713 Actinidia chinensis HOM05D000666 ORTHO05D001727 4.3e-06 56.6 140 32.9
CiPaw.09G179900 Carya illinoinensis HOM05D000666 ORTHO05D001727 5.6e-06 56.2 92 41.3
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 7.3e-06 55.8 32 75.0
Sopen10g035400 Solanum pennellii HOM05D000666 ORTHO05D001727 7.3e-06 55.8 105 41.9
ECA238G3371 Erigeron canadensis HOM05D000666 ORTHO05D001727 9.5e-06 55.5 111 36.9
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 9.5e-06 55.5 99 38.4
Solyc10g086030.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 9.5e-06 55.5 105 41.9


User provided reference genes

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