Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.1e-162 576.6 297 100.0
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 7.2e-159 563.9 297 98.0
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 2.1e-142 509.2 297 89.6
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.5e-103 380.2 301 69.1
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.1e-101 374.0 300 68.3
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 3.1e-101 372.5 295 71.9
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 5.6e-95 351.7 297 63.6
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 1.8e-69 266.9 302 53.0
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.3e-64 250.0 302 49.0
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 6.7e-64 248.4 303 50.2
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 4.3e-63 245.7 303 49.8
Peaxi162Scf00401g00425 Petunia axillaris HOM05D003759 ORTHO05D004149 8.2e-62 241.5 302 49.0
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 1.4e-58 230.7 302 47.7
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 7.4e-55 218.4 303 46.5
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 3.1e-45 186.4 306 38.9
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 4.1e-45 186.0 307 40.1
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 2.6e-44 183.3 307 42.0
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 4.5e-44 182.6 304 38.8
Oeu026461.3 Olea europaea HOM05D003759 ORTHO05D004149 3.8e-43 179.5 326 39.0
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 2.5e-42 176.8 305 40.0
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.6e-41 174.1 310 41.0
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 4.8e-38 162.5 316 38.9
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 1.6e-36 157.5 311 36.0
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 2.0e-36 157.1 313 36.7
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.7e-35 154.1 306 36.9
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 1.7e-35 154.1 307 38.1
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 8.5e-35 151.8 301 39.2
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.5e-34 151.0 285 36.5
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 2.5e-34 150.2 307 36.8
DCAR_014806 Daucus carota HOM05D003759 ORTHO05D004149 3.2e-34 149.8 299 38.1
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 3.6e-33 146.4 303 38.9
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 3.6e-33 146.4 310 33.9
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 3.6e-33 146.4 307 36.8
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 3.6e-33 146.4 305 34.4
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 5.2e-32 142.5 301 36.9
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.5e-31 141.0 305 34.4
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 3.4e-31 139.8 303 35.3
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 6.3e-30 135.6 299 34.8
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 6.3e-30 135.6 292 36.0
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 8.3e-30 135.2 281 34.2
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 3.1e-29 133.3 306 34.6
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 1.2e-28 131.3 301 36.5
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 2.0e-28 130.6 302 34.4
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 2.7e-28 130.2 309 35.6
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.3e-27 127.9 305 33.1
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.7e-27 127.5 299 33.8
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.3e-27 127.1 183 46.4
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.0e-27 125.9 302 31.5
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 2.5e-26 123.6 299 33.8
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 3.3e-26 123.2 297 33.7
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 4.2e-26 122.9 302 31.1
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 7.2e-26 122.1 304 32.6
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 7.2e-26 122.1 301 31.6
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 4.7e-25 119.4 312 33.7
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 6.1e-25 119.0 303 31.4
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 8.0e-25 118.6 308 32.5
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 2.3e-24 117.1 302 31.8
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 3.0e-24 116.7 305 33.4
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 4.0e-24 116.3 288 31.9
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 6.8e-24 115.5 321 31.2
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 1.2e-23 114.8 285 33.3
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 1.5e-23 114.4 305 33.1
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.5e-23 114.4 284 33.5
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 1.5e-23 114.4 301 33.6
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 4.4e-23 112.8 300 33.0
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 4.4e-23 112.8 300 32.7
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 5.7e-23 112.5 259 33.6
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 7.5e-23 112.1 311 33.1
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 7.5e-23 112.1 297 31.3
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 9.8e-23 111.7 118 53.4
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 2.8e-22 110.2 303 29.0
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 2.8e-22 110.2 304 31.6
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 6.3e-22 109.0 311 32.2
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 2.4e-21 107.1 307 30.3
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 3.2e-21 106.7 291 30.2
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 2.0e-20 104.0 297 27.9
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 3.5e-20 103.2 86 65.1
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 3.5e-20 103.2 304 30.6
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 4.5e-20 102.8 298 31.2
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 7.8e-20 102.1 261 34.9
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 1.0e-19 101.7 274 31.4
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 1.0e-19 101.7 302 29.8
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 1.7e-19 100.9 301 29.6
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.9e-19 100.1 293 29.4
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 5.0e-19 99.4 284 33.5
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 5.0e-19 99.4 308 28.6
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 8.6e-19 98.6 252 31.7
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 1.1e-18 98.2 304 29.6
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.9e-18 97.4 84 65.5
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 2.5e-18 97.1 283 32.5
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 2.5e-18 97.1 283 32.5
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 3.3e-18 96.7 307 28.3
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 4.3e-18 96.3 303 28.4
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 4.3e-18 96.3 303 28.4
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 4.3e-18 96.3 302 29.1
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 4.3e-18 96.3 285 27.7
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 5.6e-18 95.9 302 30.1
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 7.3e-18 95.5 301 28.9
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 1.6e-17 94.4 301 29.2
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 2.8e-17 93.6 282 33.3
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.8e-17 93.6 363 27.8
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 2.8e-17 93.6 363 27.8
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 3.6e-17 93.2 285 31.9
CsaV3_2G007570 Cucumis sativus L. HOM05D003759 ORTHO05D004149 4.7e-17 92.8 259 31.7
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 8.0e-17 92.0 308 30.8
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 1.8e-16 90.9 289 29.4
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 2.3e-16 90.5 285 31.6
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 2.3e-16 90.5 301 28.6
CiPaw.16G108400 Carya illinoinensis HOM05D003759 ORTHO05D004149 3.1e-16 90.1 296 28.0
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 4.0e-16 89.7 309 28.8
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.2e-16 89.4 304 27.6
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 6.8e-16 89.0 279 31.9
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 1.2e-15 88.2 283 30.4
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.5e-15 87.8 304 26.6
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 4.4e-15 86.3 282 29.4
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 4.4e-15 86.3 282 29.4
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 7.5e-15 85.5 283 30.0
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 7.5e-15 85.5 283 30.0
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 9.8e-15 85.1 297 30.0
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 9.8e-15 85.1 307 28.7
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 9.8e-15 85.1 314 27.7
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.7e-14 84.3 285 28.4
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 2.2e-14 84.0 268 30.2
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 2.9e-14 83.6 292 28.1
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 2.9e-14 83.6 306 26.8
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 8.3e-14 82.0 301 26.6
FAN28G1366 Fragaria x ananassa HOM05D003759 ORTHO05D004149 1.9e-13 80.9 302 25.5
FAN23G1979 Fragaria x ananassa HOM05D003759 ORTHO05D004149 2.4e-13 80.5 302 25.5
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 5.4e-13 79.3 265 28.7
FvH4_1g00810 Fragaria vesca HOM05D003759 ORTHO05D004149 1.6e-12 77.8 302 25.5
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.0e-12 77.4 287 26.5
MD02G1006500 Malus domestica HOM05D003759 ORTHO05D004149 2.7e-12 77.0 286 26.6
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 4.6e-12 76.3 288 28.8
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 4.6e-12 76.3 296 28.7
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.6e-12 76.3 114 43.0
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 4.6e-12 76.3 114 43.0
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 7.8e-12 75.5 279 28.7
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 7.8e-12 75.5 300 27.3
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 1.3e-11 74.7 295 28.8
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 1.3e-11 74.7 295 28.8
HanXRQChr16g0511321 Helianthus annuus HOM05D003759 ORTHO05D004149 1.3e-11 74.7 89 48.3
RcHm_v2.0_Chr2g0085521 Rosa chinensis HOM05D003759 ORTHO05D004149 1.3e-11 74.7 300 26.7
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 1.3e-11 74.7 175 34.9
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 1.7e-11 74.3 285 27.7
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 1.7e-11 74.3 279 28.3
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 2.3e-11 73.9 296 28.4
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 3.9e-11 73.2 292 29.5
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 5.0e-11 72.8 84 52.4
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 5.0e-11 72.8 290 27.9
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 6.6e-11 72.4 297 27.6
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 6.6e-11 72.4 280 28.6
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 6.6e-11 72.4 280 28.6
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 6.6e-11 72.4 280 28.6
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 6.6e-11 72.4 286 28.3
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.1e-10 71.6 287 28.6
Duzib168G1894 Durio zibethinus HOM05D003759 ORTHO05D004149 1.1e-10 71.6 251 25.9
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 1.9e-10 70.9 76 53.9
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 4.3e-10 69.7 262 27.5
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 2.1e-09 67.4 122 37.7
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 2.8e-09 67.0 310 23.9
ECA240G4545 Erigeron canadensis HOM05D003759 ORTHO05D004149 2.8e-09 67.0 302 27.2
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 4.7e-09 66.2 294 26.9
DCAR_021655 Daucus carota HOM05D002201 ORTHO05D007560 1.4e-08 64.7 119 34.5
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 2.3e-08 63.9 115 38.3
Sed0021485 Sechium edule HOM05D003759 ORTHO05D004149 4.0e-08 63.2 266 28.6
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 5.2e-08 62.8 288 29.9
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 5.2e-08 62.8 153 34.0
HanXRQChr13g0391321 Helianthus annuus HOM05D003759 ORTHO05D004149 8.9e-08 62.0 100 42.0
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 1.2e-07 61.6 90 46.7
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 1.5e-07 61.2 116 39.7
CsaV3_1G029050 Cucumis sativus L. HOM05D003759 ORTHO05D004149 2.0e-07 60.8 68 45.6
Potri.006G183000 Populus trichocarpa HOM05D003759 ORTHO05D004149 2.0e-07 60.8 248 25.8
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 5.8e-07 59.3 124 38.7
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 7.5e-07 58.9 136 35.3
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 9.8e-07 58.5 102 43.1
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 2.2e-06 57.4 112 38.4
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 2.2e-06 57.4 120 37.5
CDE02G3703 Ceratophyllum demersum HOM05D003759 ORTHO05D004149 3.7e-06 56.6 94 42.6
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 4.9e-06 56.2 160 32.5
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 6.4e-06 55.8 65 52.3
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 6.4e-06 55.8 102 43.1


User provided reference genes

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