Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g009670.1 Solanum lycopersicum HOM05D000191 ORTHO05D013416 1.8e-75 285.8 144 100.0
Nitab4.5_0004736g0010 Nicotiana tabacum HOM05D000191 ORTHO05D000122 3.9e-17 92.0 111 57.7
Solyc12g019040.3 Solanum lycopersicum HOM05D000191 ORTHO05D013416 5.8e-13 78.2 116 48.3
Atru.chr7.1959 Acer truncatum HOM05D000191 ORTHO05D000122 1.3e-12 77.0 97 48.5
FAN23G1501 Fragaria x ananassa HOM05D000191 ORTHO05D000122 3.8e-12 75.5 136 42.6
FAN26G0710 Fragaria x ananassa HOM05D000191 ORTHO05D000122 3.8e-12 75.5 136 42.6
FAN19G0087 Fragaria x ananassa HOM05D000191 ORTHO05D000122 3.2e-11 72.4 136 41.2
MD02G1022500 Malus domestica HOM05D000191 ORTHO05D000122 5.4e-11 71.6 135 38.5
MD15G1165200 Malus domestica HOM05D000191 ORTHO05D000122 5.4e-11 71.6 118 41.5
Eucgr.E03530 Eucalyptus grandis HOM05D000191 ORTHO05D000122 7.1e-11 71.2 118 43.2
QL02p090116 Quercus lobata HOM05D000191 ORTHO05D000122 9.3e-11 70.9 51 66.7
TAR626G1808 Trochodendron aralioides HOM05D000191 ORTHO05D000122 9.3e-11 70.9 55 65.5
Eucgr.E03525 Eucalyptus grandis HOM05D000191 ORTHO05D000122 2.7e-10 69.3 57 59.6
Nitab4.5_0000160g0150 Nicotiana tabacum HOM05D000191 ORTHO05D000122 3.5e-10 68.9 100 53.0
PSO663G0002 Papaver somniferum HOM05D000191 ORTHO05D013416 4.6e-10 68.6 124 40.3
RcHm_v2.0_Chr2g0087541 Rosa chinensis HOM05D000191 ORTHO05D000122 4.6e-10 68.6 54 59.3
Eucgr.H01381 Eucalyptus grandis HOM05D000191 ORTHO05D000122 7.9e-10 67.8 51 62.7
Prupe.7G249500 Prunus persica HOM05D000191 ORTHO05D000122 7.9e-10 67.8 124 36.3
TWI32G1223 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 7.9e-10 67.8 51 66.7
Eucgr.L02716 Eucalyptus grandis HOM05D000191 ORTHO05D000122 1.0e-09 67.4 57 57.9
FAN28G2719 Fragaria x ananassa HOM05D000191 ORTHO05D000122 1.0e-09 67.4 133 39.8
CiPaw.03G249400 Carya illinoinensis HOM05D000191 ORTHO05D000122 1.3e-09 67.0 142 35.9
FvH4_1g02511 Fragaria vesca HOM05D000191 ORTHO05D000122 1.3e-09 67.0 133 39.8
QL05p069990 Quercus lobata HOM05D000191 ORTHO05D000122 1.3e-09 67.0 59 55.9
FvH4_1g02520 Fragaria vesca HOM05D000191 ORTHO05D000122 1.8e-09 66.6 51 62.7
Lalb_Chr13g0301511 Lupinus albus HOM05D000191 ORTHO05D000122 1.8e-09 66.6 120 39.2
Potri.018G124832 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.8e-09 66.6 64 51.6
Potri.T124507 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.8e-09 66.6 64 51.6
COL.COLO4_15569 Corchorus olitorius HOM05D000191 ORTHO05D000122 2.3e-09 66.2 51 60.8
Duzib168G2363 Durio zibethinus HOM05D000191 ORTHO05D000122 2.3e-09 66.2 126 39.7
vmacro07730 Vaccinium macrocarpon HOM05D000191 ORTHO05D000122 2.3e-09 66.2 51 60.8
GSVIVG01012820001 Vitis vinifera HOM05D000191 ORTHO05D000122 3.0e-09 65.9 116 39.7
Thecc.09G134000 Theobroma cacao HOM05D000191 ORTHO05D000122 3.9e-09 65.5 135 37.0
CiPaw.07G078600 Carya illinoinensis HOM05D000191 ORTHO05D000122 5.1e-09 65.1 51 60.8
FAN02G1236 Fragaria x ananassa HOM05D000191 ORTHO05D000122 5.1e-09 65.1 54 59.3
PSO170G1096 Papaver somniferum HOM05D000191 ORTHO05D000122 6.7e-09 64.7 116 41.4
RcHm_v2.0_Chr2g0087551 Rosa chinensis HOM05D000191 ORTHO05D000122 6.7e-09 64.7 50 62.0
TAR383G0365 Trochodendron aralioides HOM05D000191 ORTHO05D000122 6.7e-09 64.7 67 52.2
CANSAT54G1602 Cannabis sativa HOM05D000191 ORTHO05D000122 8.7e-09 64.3 57 59.6
CANSAT54G2507 Cannabis sativa HOM05D000191 ORTHO05D000122 8.7e-09 64.3 71 47.9
PSO210G5977 Papaver somniferum HOM05D000191 ORTHO05D000122 8.7e-09 64.3 51 60.8
PSO675G3959 Papaver somniferum HOM05D000191 ORTHO05D000122 8.7e-09 64.3 63 49.2
GSVIVG01012806001 Vitis vinifera HOM05D000191 ORTHO05D000122 8.7e-09 64.3 53 58.5
Aqoxy7G03623 Aquilegia oxysepala HOM05D000191 ORTHO05D000122 1.1e-08 63.9 51 58.8
FAN02G3126 Fragaria x ananassa HOM05D000191 ORTHO05D013416 1.1e-08 63.9 133 37.6
MD02G1022700 Malus domestica HOM05D000191 ORTHO05D000122 1.1e-08 63.9 54 55.6
QL03p008287 Quercus lobata HOM05D000191 ORTHO05D000122 1.1e-08 63.9 121 37.2
RcHm_v2.0_Chr3g0448141 Rosa chinensis HOM05D000191 ORTHO05D000122 1.1e-08 63.9 54 57.4
PSO782G0065 Papaver somniferum HOM05D000191 ORTHO05D000122 1.5e-08 63.5 143 37.8
FAN09G0195 Fragaria x ananassa HOM05D000191 ORTHO05D013416 1.9e-08 63.2 140 36.4
MD04G1243400 Malus domestica HOM05D000191 ORTHO05D000122 1.9e-08 63.2 51 58.8
PGR031G3336 Punica granatum HOM05D000191 ORTHO05D000122 1.9e-08 63.2 48 58.3
Aqoxy7G00935 Aquilegia oxysepala HOM05D000191 ORTHO05D013416 3.3e-08 62.4 99 41.4
PSO663G0001 Papaver somniferum HOM05D000191 ORTHO05D000122 3.3e-08 62.4 109 43.1
Cfa006276 Carpinus fangiana HOM05D000191 ORTHO05D000122 4.3e-08 62.0 63 50.8
FvH4_1g02510 Fragaria vesca HOM05D000191 ORTHO05D000122 4.3e-08 62.0 107 39.3
PSO170G4912 Papaver somniferum HOM05D000191 ORTHO05D000122 4.3e-08 62.0 114 43.0
PSO782G4518 Papaver somniferum HOM05D000191 ORTHO05D000122 4.3e-08 62.0 107 40.2
Potri.018G125058 Populus trichocarpa HOM05D000191 ORTHO05D000122 4.3e-08 62.0 56 53.6
Potri.T124707 Populus trichocarpa HOM05D000191 ORTHO05D000122 4.3e-08 62.0 56 53.6
Rhsim02G0203000 Rhododendron simsii HOM05D000191 ORTHO05D013416 4.3e-08 62.0 72 47.2
GSVIVG01012808001 Vitis vinifera HOM05D000191 ORTHO05D000122 5.6e-08 61.6 49 61.2
Cfa002298 Carpinus fangiana HOM05D000191 ORTHO05D000122 7.4e-08 61.2 52 59.6
CiPaw.07G078700 Carya illinoinensis HOM05D000191 ORTHO05D000122 7.4e-08 61.2 51 56.9
Ciclev10010441m.g Citrus clementina HOM05D000191 ORTHO05D000122 7.4e-08 61.2 124 39.5
Haze_25488 Corylus avellana HOM05D000191 ORTHO05D000122 7.4e-08 61.2 132 40.9
PSO449G0001 Papaver somniferum HOM05D000191 ORTHO05D013416 7.4e-08 61.2 91 42.9
VMungo1215G2586 Vigna mungo HOM05D000191 ORTHO05D000122 7.4e-08 61.2 49 59.2
EL10Ac8g18734 Beta vulgaris HOM05D000191 ORTHO05D000122 9.6e-08 60.8 50 60.0
CANSAT54G0509 Cannabis sativa HOM05D000191 ORTHO05D000122 9.6e-08 60.8 49 61.2
Glyma.17G110500 Glycine max HOM05D000191 ORTHO05D000122 9.6e-08 60.8 51 58.8
Gorai.010G060600 Gossypium raimondii HOM05D000191 ORTHO05D000122 9.6e-08 60.8 56 55.4
RcHm_v2.0_Chr3g0448161 Rosa chinensis HOM05D000191 ORTHO05D000122 9.6e-08 60.8 56 57.1
CANSAT11G2614 Cannabis sativa HOM05D000191 ORTHO05D000122 1.3e-07 60.5 51 56.9
FvH4_6g00700 Fragaria vesca HOM05D000191 ORTHO05D000122 1.3e-07 60.5 49 59.2
MD02G1022600 Malus domestica HOM05D000191 ORTHO05D000122 1.3e-07 60.5 50 60.0
Phvul.003G169600 Phaseolus vulgaris HOM05D000191 ORTHO05D000122 1.3e-07 60.5 118 39.8
Prupe.6G359600 Prunus persica HOM05D000191 ORTHO05D000122 1.3e-07 60.5 63 55.6
Sabra18G0027800 Salix brachista HOM05D000191 ORTHO05D000122 1.3e-07 60.5 51 58.8
Atru.chr7.1958 Acer truncatum HOM05D000191 ORTHO05D000122 1.6e-07 60.1 52 59.6
CANSAT11G0736 Cannabis sativa HOM05D000191 ORTHO05D000122 1.6e-07 60.1 78 42.3
ClCG06G011600 Citrullus lanatus HOM05D000191 ORTHO05D000122 1.6e-07 60.1 46 63.0
Lalb_Chr13g0301521 Lupinus albus HOM05D000191 ORTHO05D013416 1.6e-07 60.1 61 52.5
Atru.chr7.1957 Acer truncatum HOM05D000191 ORTHO05D000122 2.1e-07 59.7 63 50.8
Aqoxy7G03620 Aquilegia oxysepala HOM05D000191 ORTHO05D013416 2.1e-07 59.7 61 55.7
CiPaw.03G249300 Carya illinoinensis HOM05D000191 ORTHO05D000122 2.8e-07 59.3 64 54.7
Thhalv10015371m.g Eutrema salsugineum HOM05D000191 ORTHO05D000122 2.8e-07 59.3 53 49.1
Glyma.17G110300 Glycine max HOM05D000191 ORTHO05D000122 2.8e-07 59.3 51 58.8
MD15G1165300 Malus domestica HOM05D000191 ORTHO05D000122 2.8e-07 59.3 102 38.2
CSS0046224 Camellia sinensis var. sinensis HOM05D000191 ORTHO05D000122 3.7e-07 58.9 107 38.3
Potri.006G064600 Populus trichocarpa HOM05D000191 ORTHO05D000122 4.8e-07 58.5 63 46.0
QL05p069996 Quercus lobata HOM05D000191 ORTHO05D013416 4.8e-07 58.5 59 52.5
AUR62011186 Chenopodium quinoa HOM05D000191 ORTHO05D000122 6.2e-07 58.2 50 56.0
MELO3C010302.2 Cucumis melo HOM05D000191 ORTHO05D000122 6.2e-07 58.2 59 52.5
PSO675G7354 Papaver somniferum HOM05D000191 ORTHO05D000122 6.2e-07 58.2 63 44.4
VMungo1215G1484 Vigna mungo HOM05D000191 ORTHO05D000122 6.2e-07 58.2 51 56.9
Cpa.g.sc46.53 Carica papaya HOM05D000191 ORTHO05D000122 8.1e-07 57.8 46 54.3
Gohir.D08G100200 Gossypium hirsutum HOM05D000191 ORTHO05D000122 8.1e-07 57.8 115 34.8
MBI18_g27686_MAGBIO Magnolia biondii HOM05D000191 ORTHO05D000122 8.1e-07 57.8 47 57.4
Ciclev10010628m.g Citrus clementina HOM05D000191 ORTHO05D000122 1.1e-06 57.4 111 36.9
Glyma.13G161200 Glycine max HOM05D000191 ORTHO05D000122 1.1e-06 57.4 49 57.1
Lalb_Chr13g0301471 Lupinus albus HOM05D000191 ORTHO05D013416 1.1e-06 57.4 96 38.5
MD04G1243300 Malus domestica HOM05D000191 ORTHO05D000122 1.1e-06 57.4 58 50.0
Nn2g12131 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.1e-06 57.4 55 52.7
PSO210G0345 Papaver somniferum HOM05D000191 ORTHO05D000122 1.1e-06 57.4 131 37.4
PSO210G4449 Papaver somniferum HOM05D000191 ORTHO05D000122 1.1e-06 57.4 96 40.6
Sed0002084 Sechium edule HOM05D000191 ORTHO05D000122 1.1e-06 57.4 112 42.9
CsaV3_1G027900 Cucumis sativus L. HOM05D000191 ORTHO05D000122 1.4e-06 57.0 59 52.5
QL02p090065 Quercus lobata HOM05D000191 ORTHO05D000122 1.4e-06 57.0 57 56.1
QL02p090077 Quercus lobata HOM05D000191 ORTHO05D000122 1.4e-06 57.0 54 55.6
TWI34G1072 Tripterygium wilfordii HOM05D000191 ORTHO05D000122 1.4e-06 57.0 107 35.5
CANSAT21G2031 Cannabis sativa HOM05D000191 ORTHO05D000122 1.8e-06 56.6 49 57.1
Gorai.004G108000 Gossypium raimondii HOM05D000191 ORTHO05D000122 1.8e-06 56.6 115 33.9
Potri.018G025200 Populus trichocarpa HOM05D000191 ORTHO05D000122 1.8e-06 56.6 114 36.8
TPR.G7623 Trifolium pratense HOM05D000191 ORTHO05D000122 1.8e-06 56.6 86 44.2
arahy.Tifrunner.gnm1.ann1.KMDC3J Arachis hypogaea HOM05D000191 ORTHO05D000122 2.4e-06 56.2 49 55.1
THA.LOC104808962 Tarenaya hassleriana HOM05D000191 ORTHO05D000122 2.4e-06 56.2 70 42.9
GSVIVG01012807001 Vitis vinifera HOM05D000191 ORTHO05D000122 2.4e-06 56.2 49 55.1
Aa31LG2G16480 Aethionema arabicum HOM05D000191 ORTHO05D000122 3.1e-06 55.8 72 43.1
Gohir.A06G053300 Gossypium hirsutum HOM05D000191 ORTHO05D000122 3.1e-06 55.8 130 34.6
PSO170G1284 Papaver somniferum HOM05D000191 ORTHO05D000122 3.1e-06 55.8 116 36.2
Psat4g036360 Pisum sativum HOM05D000191 ORTHO05D000122 3.1e-06 55.8 50 52.0
Potri.006G064700 Populus trichocarpa HOM05D000191 ORTHO05D000122 3.1e-06 55.8 56 50.0
RcHm_v2.0_Chr2g0087521 Rosa chinensis HOM05D000191 ORTHO05D000122 3.1e-06 55.8 50 56.0
Aa31LG7G11460 Aethionema arabicum HOM05D000191 ORTHO05D000122 4.0e-06 55.5 50 52.0
Thecc.09G133900 Theobroma cacao HOM05D000191 ORTHO05D000122 4.0e-06 55.5 122 36.9
GSVIVG01012805001 Vitis vinifera HOM05D000191 ORTHO05D000122 4.0e-06 55.5 49 55.1
BcaC04g19416 Brassica carinata HOM05D000191 ORTHO05D000122 5.3e-06 55.1 88 35.2
C09p55940 Brassica napus HOM05D000191 ORTHO05D000122 5.3e-06 55.1 88 35.2
BolC9t58463H Brassica oleracea HOM05D000191 ORTHO05D000122 5.3e-06 55.1 88 35.2
BraA10t44043Z Brassica rapa HOM05D000191 ORTHO05D000122 5.3e-06 55.1 102 34.3
Nn8g39573 Nelumbo nucifera HOM05D000191 ORTHO05D000122 5.3e-06 55.1 128 39.1
QL03p008280 Quercus lobata HOM05D000191 ORTHO05D013416 5.3e-06 55.1 139 36.0
arahy.Tifrunner.gnm1.ann1.63B5RA Arachis hypogaea HOM05D000191 ORTHO05D000122 6.9e-06 54.7 49 53.1
CANSAT11G1985 Cannabis sativa HOM05D000191 ORTHO05D000122 6.9e-06 54.7 129 31.0
AUR62013298 Chenopodium quinoa HOM05D002410 ORTHO05D002805 6.9e-06 54.7 47 55.3
MD04G1243200 Malus domestica HOM05D000191 ORTHO05D000122 6.9e-06 54.7 51 52.9
VMungo1215G0089 Vigna mungo HOM05D000191 ORTHO05D000122 6.9e-06 54.7 52 55.8
A10p19680 Brassica napus HOM05D000191 ORTHO05D000122 9.0e-06 54.3 102 34.3
CANSAT11G2602 Cannabis sativa HOM05D000191 ORTHO05D000122 9.0e-06 54.3 51 52.9
ClCG11G003350 Citrullus lanatus HOM05D000191 ORTHO05D000122 9.0e-06 54.3 51 51.0
Haze_04534 Corylus avellana HOM05D000191 ORTHO05D000122 9.0e-06 54.3 58 46.6
Medtr4g115530 Medicago truncatula HOM05D000191 ORTHO05D000122 9.0e-06 54.3 49 51.0
PSO170G0629 Papaver somniferum HOM05D000191 ORTHO05D000122 9.0e-06 54.3 121 33.1
THA.LOC104799637 Tarenaya hassleriana HOM05D000191 ORTHO05D000122 9.0e-06 54.3 68 45.6


User provided reference genes

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