Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 1.5e-60 236.1 133 100.0
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 2.6e-60 235.3 133 99.2
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.5e-51 204.1 133 79.7
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 8.5e-51 203.8 133 75.9
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 9.7e-47 190.3 114 95.6
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 5.3e-45 184.5 133 75.9
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 4.5e-36 154.8 135 57.8
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.6e-33 145.2 134 57.5
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.0e-32 143.7 135 67.4
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.0e-32 142.1 136 67.6
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 5.2e-32 141.4 136 55.1
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 1.2e-31 140.2 134 63.4
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.5e-31 139.8 135 55.6
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.4e-31 138.7 136 58.8
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 3.4e-31 138.7 133 53.4
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 5.7e-31 137.9 135 57.0
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 7.5e-31 137.5 136 58.1
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 7.5e-31 137.5 134 53.0
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.3e-30 134.4 134 52.2
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 6.3e-30 134.4 134 52.2
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.4e-29 132.5 135 60.7
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 3.1e-29 132.1 134 63.4
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 4.1e-29 131.7 134 61.9
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.3e-29 131.3 134 53.0
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 134 52.2
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.0e-28 129.4 136 55.1
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 2.7e-28 129.0 134 49.3
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.5e-28 128.6 134 51.5
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 4.5e-28 128.3 138 58.0
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.5e-28 128.3 135 63.0
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 7.7e-28 127.5 134 52.2
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 7.7e-28 127.5 134 50.7
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 7.7e-28 127.5 133 62.4
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.0e-27 127.1 139 51.1
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.0e-27 127.1 132 51.5
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.7e-27 126.3 145 45.5
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.7e-27 126.3 134 61.9
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.9e-27 125.6 137 62.0
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.8e-27 125.2 133 49.6
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 6.5e-27 124.4 134 60.4
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 8.5e-27 124.0 133 48.1
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 2.5e-26 122.5 133 47.4
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 3.2e-26 122.1 137 50.4
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 3.2e-26 122.1 136 56.6
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.5e-26 121.3 134 57.5
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 7.2e-26 120.9 138 59.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 9.4e-26 120.6 138 59.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.6e-25 119.8 134 49.3
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 2.1e-25 119.4 137 60.6
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.1e-25 119.4 134 54.5
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 2.7e-25 119.0 141 53.2
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 4.7e-25 118.2 136 57.4
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 4.7e-25 118.2 135 61.5
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 8.0e-25 117.5 136 57.4
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 8.0e-25 117.5 109 54.1
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.4e-24 116.7 136 59.6
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.4e-24 116.7 135 48.1
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.4e-24 116.7 137 49.6
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.8e-24 116.3 130 57.7
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 2.3e-24 115.9 134 57.5
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.0e-24 115.5 134 56.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 3.0e-24 115.5 135 58.5
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 3.0e-24 115.5 133 49.6
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 3.0e-24 115.5 144 59.0
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.8e-24 114.4 130 47.7
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 8.8e-24 114.0 132 57.6
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 8.8e-24 114.0 132 57.6
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 1.5e-23 113.2 144 43.1
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.0e-23 112.8 138 48.6
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.0e-23 112.8 130 59.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.0e-23 112.8 138 54.3
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.0e-23 112.8 134 47.8
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.6e-23 112.5 107 60.7
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 2.6e-23 112.5 107 60.7
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.6e-23 112.5 132 57.6
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 2.6e-23 112.5 135 48.9
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.6e-23 112.5 134 50.7
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 3.4e-23 112.1 134 50.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 4.4e-23 111.7 134 58.2
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 7.5e-23 110.9 131 58.8
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 7.5e-23 110.9 132 58.3
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 7.5e-23 110.9 136 45.6
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 7.5e-23 110.9 132 52.3
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 1.3e-22 110.2 136 55.9
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.2e-22 109.4 141 44.7
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 2.8e-22 109.0 151 42.4
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 3.7e-22 108.6 139 46.8
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.8e-22 108.2 110 65.5
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 6.3e-22 107.8 146 45.9
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.1e-21 107.1 115 62.6
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 2.4e-21 105.9 134 56.0
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 3.1e-21 105.5 141 53.2
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 3.1e-21 105.5 89 71.9
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 3.1e-21 105.5 135 54.8
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 4.1e-21 105.1 136 54.4
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 7.0e-21 104.4 84 76.2
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.1e-21 104.0 133 42.1
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.1e-21 104.0 133 42.1
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 2.7e-20 102.4 143 45.5
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 3.5e-20 102.1 135 43.0
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 3.5e-20 102.1 134 46.3
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 4.5e-20 101.7 136 54.4
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.5e-20 101.7 89 60.7
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 1.3e-19 100.1 136 52.9
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 1.3e-19 100.1 136 52.9
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 1.7e-19 99.8 137 46.0
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 2.3e-19 99.4 147 44.2
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.3e-19 99.4 92 51.1
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 5.0e-19 98.2 142 53.5
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 146 52.7
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 6.6e-19 97.8 113 47.8
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 6.6e-19 97.8 135 43.0
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 8.6e-19 97.4 147 52.4
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 1.5e-18 96.7 141 49.6
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.9e-18 96.3 92 53.3
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 7.2e-18 94.4 133 51.9
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 7.2e-18 94.4 108 48.1
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.6e-17 93.2 83 69.9
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 2.1e-17 92.8 133 41.4
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 2.8e-17 92.4 134 41.0
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 2.8e-17 92.4 134 51.5
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 3.6e-17 92.0 142 39.4
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 83 69.9
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 4.7e-17 91.7 103 61.2
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 4.7e-17 91.7 137 51.1
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.7e-17 91.7 80 55.0
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 6.1e-17 91.3 138 52.9
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 6.1e-17 91.3 118 41.5
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.4e-16 90.1 138 39.1
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.4e-16 90.1 137 51.1
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.4e-16 90.1 72 68.1
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.4e-16 90.1 107 46.7
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 3.0e-16 89.0 136 51.5
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 3.0e-16 89.0 125 42.4
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 5.2e-16 88.2 86 69.8
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 8.9e-16 87.4 104 49.0
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 1.2e-15 87.0 80 66.2
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.2e-15 87.0 80 52.5
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 1.5e-15 86.7 115 55.7
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.4e-15 85.5 130 36.2
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 7.5e-15 84.3 137 37.2
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 7.5e-15 84.3 84 66.7
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 9.8e-15 84.0 68 58.8
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 9.8e-15 84.0 105 41.9
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 9.8e-15 84.0 86 50.0
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.3e-14 83.6 103 59.2
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.7e-14 83.2 80 52.5
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.7e-14 83.2 59 64.4
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.2e-14 82.8 157 39.5
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.8e-14 82.4 85 51.8
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 3.7e-14 82.0 123 39.0
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.9e-14 81.6 134 51.5
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 6.3e-14 81.3 133 48.9
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 1.1e-13 80.5 70 51.4
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.1e-13 80.5 84 64.3
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.4e-13 80.1 85 49.4
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.4e-13 80.1 91 62.6
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 1.4e-13 80.1 89 57.3
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.1e-13 78.6 82 47.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 9.2e-13 77.4 82 65.9
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.2e-13 77.4 82 65.9
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.2e-13 77.4 82 65.9
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 9.2e-13 77.4 90 61.1
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 9.2e-13 77.4 131 44.3
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.6e-12 76.6 83 62.7
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 1.6e-12 76.6 90 60.0
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 2.0e-12 76.3 84 60.7
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 3.5e-12 75.5 148 37.2
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 4.5e-12 75.1 77 46.8
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.9e-12 74.7 55 63.6
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 5.9e-12 74.7 86 50.0
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.3e-11 73.6 118 39.8
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 5.0e-11 71.6 91 45.1
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 5.0e-11 71.6 82 45.1
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.3e-10 68.9 59 57.6
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 7.3e-10 67.8 59 54.2
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.1e-09 64.7 31 87.1
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.0e-08 63.9 31 83.9
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.0e-08 63.9 31 83.9
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 1.0e-08 63.9 123 32.5
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.8e-08 63.2 56 55.4
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.8e-08 61.2 55 52.7
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.0e-07 59.7 90 36.7


User provided reference genes

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