Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g008860.3 Solanum lycopersicum HOM05D006545 ORTHO05D007985 3.5e-74 281.6 144 100.0
Sopen12g003790 Solanum pennellii HOM05D006545 ORTHO05D007985 1.6e-34 149.8 79 100.0
PGSC0003DMG400000279 Solanum tuberosum HOM05D006545 ORTHO05D007985 1.3e-33 146.7 79 97.5
Actinidia29903 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.1e-31 139.4 82 90.2
MSTRG.10562 Avicennia marina HOM05D006545 ORTHO05D007985 6.2e-31 137.9 82 87.8
Nitab4.5_0000540g0270 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.1e-30 135.6 79 88.6
Dinv42321 Davidia involucrata HOM05D006545 ORTHO05D007985 8.9e-30 134.0 79 89.9
Nitab4.5_0008523g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 8.9e-30 134.0 80 87.5
Migut.L01494 Erythranthe guttata HOM05D006545 ORTHO05D007985 1.2e-29 133.7 79 86.1
vmacro06292 Vaccinium macrocarpon HOM05D006545 ORTHO05D007985 2.6e-29 132.5 79 86.1
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 1.3e-28 130.2 136 61.0
GSVIVG01015199001 Vitis vinifera HOM05D006545 ORTHO05D007985 1.3e-28 130.2 79 83.5
Actinidia19138 Actinidia chinensis HOM05D006545 ORTHO05D007985 1.7e-28 129.8 79 88.6
Dinv36770 Davidia involucrata HOM05D006545 ORTHO05D007985 1.7e-28 129.8 79 87.3
Nn8g38862 Nelumbo nucifera HOM05D006545 ORTHO05D007985 2.2e-28 129.4 92 73.9
HanXRQChr12g0363181 Helianthus annuus HOM05D006545 ORTHO05D007985 3.8e-28 128.6 79 84.8
Cc06_g11430 Coffea canephora HOM05D006545 ORTHO05D007985 1.1e-27 127.1 82 78.0
TAR383G1000 Trochodendron aralioides HOM05D006545 ORTHO05D007985 1.1e-27 127.1 78 84.6
CiPaw.04G149100 Carya illinoinensis HOM05D006545 ORTHO05D007985 1.9e-27 126.3 74 87.8
Lsat_1_v5_gn_7_37040 Lactuca sativa HOM05D006545 ORTHO05D007985 2.4e-27 125.9 77 85.7
PGR102G1056 Punica granatum HOM05D006545 ORTHO05D007985 7.1e-27 124.4 74 87.8
RcHm_v2.0_Chr2g0093401 Rosa chinensis HOM05D006545 ORTHO05D007985 7.1e-27 124.4 74 86.5
Ciclev10010087m.g Citrus clementina HOM05D006545 ORTHO05D007985 9.2e-27 124.0 74 86.5
CDE06G0764 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 79.7
CDE07G1614 Ceratophyllum demersum HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 79.7
DCAR_028856 Daucus carota HOM05D006545 ORTHO05D007985 1.2e-26 123.6 76 85.5
DCAR_032235 Daucus carota HOM05D006545 ORTHO05D007985 1.2e-26 123.6 76 85.5
Gohir.A05G030100 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 82.3
Gohir.D05G031500 Gossypium hirsutum HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 82.3
Gorai.009G031700 Gossypium raimondii HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 82.3
Thecc.09G088900 Theobroma cacao HOM05D006545 ORTHO05D007985 1.2e-26 123.6 79 82.3
MELO3C015473.2 Cucumis melo HOM05D006545 ORTHO05D007985 1.6e-26 123.2 79 75.9
Duzib150G0099 Durio zibethinus HOM05D006545 ORTHO05D007985 1.6e-26 123.2 79 82.3
QL02p062521 Quercus lobata HOM05D006545 ORTHO05D007985 1.6e-26 123.2 73 87.7
Sc18g0002090 Simmondsia chinensis HOM05D000085 ORTHO05D001460 1.6e-26 123.2 122 58.2
CiPaw.03G215100 Carya illinoinensis HOM05D006545 ORTHO05D007985 2.1e-26 122.9 74 85.1
Lj4g0002489 Lotus japonicus HOM05D006545 ORTHO05D007985 2.1e-26 122.9 74 86.5
FvH4_1g07510 Fragaria vesca HOM05D006545 ORTHO05D007985 3.5e-26 122.1 74 85.1
FAN19G0384 Fragaria x ananassa HOM05D006545 ORTHO05D007985 3.5e-26 122.1 74 85.1
FAN23G2021 Fragaria x ananassa HOM05D006545 ORTHO05D007985 3.5e-26 122.1 74 85.1
FAN26G0590 Fragaria x ananassa HOM05D006545 ORTHO05D007985 3.5e-26 122.1 74 85.1
unitig_85.g27258 Utricularia gibba HOM05D006545 ORTHO05D007985 3.5e-26 122.1 79 82.3
Duzib168G1224 Durio zibethinus HOM05D006545 ORTHO05D007985 4.6e-26 121.7 79 81.0
Potri.004G215200 Populus trichocarpa HOM05D006545 ORTHO05D007985 4.6e-26 121.7 79 81.0
ECA240G1755 Erigeron canadensis HOM05D006545 ORTHO05D007985 6.0e-26 121.3 80 82.5
Gohir.A13G193400 Gossypium hirsutum HOM05D006545 ORTHO05D007985 6.0e-26 121.3 79 79.7
CsaV3_1G040450 Cucumis sativus L. HOM05D006545 ORTHO05D007985 7.8e-26 120.9 74 79.7
Prupe.7G209400 Prunus persica HOM05D006545 ORTHO05D007985 1.0e-25 120.6 88 76.1
ClCG03G015590 Citrullus lanatus HOM05D006545 ORTHO05D007985 1.3e-25 120.2 92 62.0
Glyma.13G104200 Glycine max HOM05D006545 ORTHO05D007985 1.3e-25 120.2 74 83.8
Glyma.17G054900 Glycine max HOM05D006545 ORTHO05D007985 1.3e-25 120.2 74 83.8
Phvul.003G136800 Phaseolus vulgaris HOM05D006545 ORTHO05D007985 1.3e-25 120.2 74 82.4
Gohir.D13G199200 Gossypium hirsutum HOM05D006545 ORTHO05D007985 2.3e-25 119.4 79 78.5
PSO832G3375 Papaver somniferum HOM05D006545 ORTHO05D007985 2.3e-25 119.4 79 73.4
Gorai.013G227700 Gossypium raimondii HOM05D006545 ORTHO05D007985 3.9e-25 118.6 79 78.5
PSO063G6244 Papaver somniferum HOM05D006545 ORTHO05D007985 3.9e-25 118.6 79 73.4
CANSAT56G1499 Cannabis sativa HOM05D006545 ORTHO05D007985 5.1e-25 118.2 74 82.4
CANSAT56G4473 Cannabis sativa HOM05D006545 ORTHO05D007985 5.1e-25 118.2 74 82.4
Atru.chr7.1592 Acer truncatum HOM05D006545 ORTHO05D007985 8.7e-25 117.5 74 83.8
AUR62033964 Chenopodium quinoa HOM05D006545 ORTHO05D007985 8.7e-25 117.5 78 80.8
Manes.03G034000 Manihot esculenta HOM05D006545 ORTHO05D007985 8.7e-25 117.5 76 80.3
THA.LOC104820022 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 8.7e-25 117.5 76 82.9
Nitab4.5_0006552g0040 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.1e-24 117.1 77 83.1
ATR0749G052 Amborella trichopoda HOM05D006545 ORTHO05D007985 1.5e-24 116.7 79 73.4
unitig_699.g19296 Utricularia gibba HOM05D006545 ORTHO05D007985 1.5e-24 116.7 80 76.2
Psat4g015120 Pisum sativum HOM05D006545 ORTHO05D007985 2.5e-24 115.9 76 78.9
TWI34G0024 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 2.5e-24 115.9 74 82.4
Aqoxy7G01208 Aquilegia oxysepala HOM05D006545 ORTHO05D007985 3.3e-24 115.5 78 75.6
EL10Ac8g19212 Beta vulgaris HOM05D006545 ORTHO05D007985 3.3e-24 115.5 79 74.7
Manes.16G101800 Manihot esculenta HOM05D006545 ORTHO05D007985 3.3e-24 115.5 76 80.3
MBI04_g31162_MAGBIO Magnolia biondii HOM05D006545 ORTHO05D007985 5.6e-24 114.8 79 72.2
TWI63G0169 Tripterygium wilfordii HOM05D006545 ORTHO05D007985 5.6e-24 114.8 74 81.1
AUR62029070 Chenopodium quinoa HOM05D006545 ORTHO05D007985 7.3e-24 114.4 78 78.2
PSO210G4511 Papaver somniferum HOM05D006545 ORTHO05D007985 7.3e-24 114.4 79 77.2
Thhalv10026717m.g Eutrema salsugineum HOM05D006545 ORTHO05D007985 9.6e-24 114.0 76 80.3
Potri.006G146800 Populus trichocarpa HOM05D006545 ORTHO05D007985 9.6e-24 114.0 79 74.7
Sabra06G0115900 Salix brachista HOM05D006545 ORTHO05D007985 9.6e-24 114.0 79 74.7
Eucgr.C00895 Eucalyptus grandis HOM05D006545 ORTHO05D007985 1.2e-23 113.6 77 75.3
PSO210G2413 Papaver somniferum HOM05D006545 ORTHO05D007985 1.2e-23 113.6 79 77.2
Lalb_Chr13g0299701 Lupinus albus HOM05D006545 ORTHO05D007985 1.6e-23 113.2 76 76.3
THA.LOC104814622 Tarenaya hassleriana HOM05D006545 ORTHO05D007985 1.6e-23 113.2 75 80.0
Aa31LG2G20830 Aethionema arabicum HOM05D006545 ORTHO05D007985 2.8e-23 112.5 76 78.9
Sp7g27510 Schrenkiella parvula HOM05D006545 ORTHO05D007985 2.8e-23 112.5 76 78.9
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 2.8e-23 112.5 90 63.3
AL7G22570 Arabidopsis lyrata HOM05D006545 ORTHO05D007985 3.6e-23 112.1 76 78.9
Carub.0007s1077 Capsella rubella HOM05D006545 ORTHO05D007985 3.6e-23 112.1 76 78.9
CARHR237610 Cardamine hirsuta HOM05D006545 ORTHO05D007985 3.6e-23 112.1 76 78.9
Os06g0567000 Oryza sativa ssp. japonica HOM05D006545 ORTHO05D007985 3.6e-23 112.1 76 76.3
AT4G29735 Arabidopsis thaliana HOM05D006545 ORTHO05D007985 8.1e-23 110.9 76 77.6
Lalb_Chr07g0180851 Lupinus albus HOM05D006545 ORTHO05D007985 8.1e-23 110.9 76 76.3
Ah.09g228260 Amaranthus hybridus HOM05D006545 ORTHO05D007985 1.1e-22 110.5 79 72.2
C03p89150 Brassica napus HOM05D006545 ORTHO05D007985 1.1e-22 110.5 89 70.8
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 1.8e-22 109.8 74 77.0
Medtr4g126270 Medicago truncatula HOM05D000085 ORTHO05D001460 2.4e-22 109.4 74 75.7
BcaC01g01182 Brassica carinata HOM05D006545 ORTHO05D007985 3.1e-22 109.0 89 69.7
MD02G1079700 Malus domestica HOM05D006545 ORTHO05D007985 3.1e-22 109.0 76 75.0
Sed0026852 Sechium edule HOM05D006545 ORTHO05D007985 3.1e-22 109.0 74 74.3
Zm00001eb383910 Zea mays HOM05D006545 ORTHO05D007985 4.0e-22 108.6 76 73.7
arahy.Tifrunner.gnm1.ann1.MQ59WG Arachis hypogaea HOM05D000085 ORTHO05D001460 5.2e-22 108.2 74 78.4
arahy.Tifrunner.gnm1.ann1.CH1R66 Arachis hypogaea HOM05D006545 ORTHO05D007985 6.9e-22 107.8 74 77.0
arahy.Tifrunner.gnm1.ann1.S1CX09 Arachis hypogaea HOM05D006545 ORTHO05D007985 6.9e-22 107.8 74 77.0
BcaNung00485 Brassica carinata HOM05D006545 ORTHO05D007985 1.5e-21 106.7 76 75.0
A03p59030 Brassica napus HOM05D006545 ORTHO05D007985 1.5e-21 106.7 77 74.0
Zm00001eb277360 Zea mays HOM05D006545 ORTHO05D007985 2.6e-21 105.9 75 72.0
A01p08390 Brassica napus HOM05D000125 ORTHO05D000120 1.7e-20 103.2 83 69.9
BraA01t00787Z Brassica rapa HOM05D000125 ORTHO05D000120 1.7e-20 103.2 100 62.0
MD15G1207400 Malus domestica HOM05D006545 ORTHO05D007985 3.8e-20 102.1 74 70.3
Nitab4.5_0004526g0070 Nicotiana tabacum HOM05D006545 ORTHO05D007985 3.8e-20 102.1 63 88.9
TAR624G0377 Trochodendron aralioides HOM05D002302 ORTHO05D002728 3.8e-20 102.1 92 60.9
Nitab4.5_0004223g0010 Nicotiana tabacum HOM05D006545 ORTHO05D007985 8.4e-20 100.9 63 82.5
BcaC09g51752 Brassica carinata HOM05D006545 ORTHO05D007985 2.1e-18 96.3 76 69.7
FAN26G2289 Fragaria x ananassa HOM05D006545 ORTHO05D007985 2.1e-18 96.3 60 78.3
COL.COLO4_18197 Corchorus olitorius HOM05D002302 ORTHO05D002728 3.5e-18 95.5 68 75.0
Mapoly0003s0235 Marchantia polymorpha HOM05D006545 ORTHO05D007985 3.5e-18 95.5 79 63.3
BraA03t14963Z Brassica rapa HOM05D006545 ORTHO05D007985 6.0e-18 94.7 98 59.2
BcaC09g52224 Brassica carinata HOM05D006545 ORTHO05D007985 1.0e-17 94.0 63 79.4
C01p09720 Brassica napus HOM05D006545 ORTHO05D007985 2.3e-17 92.8 98 57.1
C07p57080 Brassica napus HOM05D006545 ORTHO05D007985 6.6e-17 91.3 63 79.4
BolC7t46179H Brassica oleracea HOM05D006545 ORTHO05D007985 6.6e-17 91.3 102 55.9
Nitab4.5_0000095g0160 Nicotiana tabacum HOM05D006545 ORTHO05D007985 1.1e-16 90.5 74 67.6
SalBow5G5008 Salvia bowleyana HOM05D006545 ORTHO05D007985 1.9e-16 89.7 62 74.2
HPP92_008778 Vanilla planifolia HOM05D006545 ORTHO05D007985 3.3e-16 89.0 58 74.1
Pp3c11_23220 Physcomitrium patens HOM05D006545 ORTHO05D007985 9.6e-16 87.4 73 64.4
HanXRQChr12g0377121 Helianthus annuus HOM05D006545 ORTHO05D007985 2.8e-15 85.9 56 82.1
SMO361G0088 Selaginella moellendorffii HOM05D006545 ORTHO05D007985 8.1e-15 84.3 75 57.3
C01p09580 Brassica napus HOM05D000125 ORTHO05D007985 3.4e-13 79.0 63 73.0
C01p09620 Brassica napus HOM05D006545 ORTHO05D007985 6.4e-12 74.7 96 54.2
Rhsim03G0232100 Rhododendron simsii HOM05D000004 ORTHO05D007985 7.1e-11 71.2 47 83.0
A08p19550 Brassica napus HOM05D006545 ORTHO05D007985 5.1e-09 65.1 46 76.1
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 1.9e-08 63.2 39 71.8
unitig_699.g19997 Utricularia gibba HOM05D006545 ORTHO05D007985 1.9e-08 63.2 80 47.5
Lj7C676T8 Lonicera japonica HOM05D006545 ORTHO05D007985 9.6e-08 60.8 37 86.5
Rhsim05G0059100 Rhododendron simsii HOM05D006545 ORTHO05D007985 9.6e-08 60.8 38 76.3
BcaB03g12615 Brassica carinata HOM05D006545 ORTHO05D007985 2.1e-07 59.7 47 63.8
Pp3c7_2400 Physcomitrium patens HOM05D006545 ORTHO05D007985 3.1e-06 55.8 128 34.4
Sed0013060 Sechium edule HOM05D000140 ORTHO05D000087 6.9e-06 54.7 32 71.9


User provided reference genes

Program Settings