Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 0.0e+00 1075.8 525 100.0
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 3.4e-305 1050.8 525 98.1
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 1.1e-295 1019.2 525 95.2
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.7e-265 918.3 510 88.2
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 1.2e-225 786.6 527 75.3
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 1.2e-209 733.4 529 69.2
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 4.6e-209 731.5 521 70.1
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 6.0e-209 731.1 520 69.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.9e-208 728.4 511 69.9
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 5.1e-208 728.0 522 68.8
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 1.1e-207 726.9 521 69.7
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 1.9e-207 726.1 521 67.6
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 1.6e-206 723.0 516 69.8
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 2.8e-206 722.2 517 68.5
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 4.8e-206 721.5 515 68.7
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 4.8e-206 721.5 513 68.6
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 6.2e-206 721.1 521 68.3
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 1.4e-205 719.9 523 68.3
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 1.3e-203 713.4 522 67.0
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 1.9e-202 709.5 520 67.9
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 1.6e-201 706.4 526 65.8
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 1.0e-200 703.7 523 67.1
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 1.8e-200 703.0 516 66.9
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 6.7e-200 701.0 515 66.6
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 3.3e-199 698.7 524 66.2
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 2.1e-198 696.0 490 70.8
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 2.1e-198 696.0 525 65.5
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 3.7e-198 695.3 523 66.5
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 1.4e-197 693.3 535 64.5
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 4.1e-197 691.8 526 64.8
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.2e-196 690.3 526 65.4
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 2.6e-196 689.1 383 87.2
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.3e-195 686.8 526 64.4
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 1.7e-195 686.4 520 65.0
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 2.9e-195 685.6 525 64.4
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 2.9e-195 685.6 516 65.3
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 3.8e-195 685.3 522 65.3
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 8.4e-195 684.1 425 80.0
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.4e-194 683.3 526 65.0
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 1.6e-193 679.9 524 64.7
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 7.9e-193 677.6 517 65.8
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 1.1e-191 673.7 512 64.5
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 9.7e-191 670.6 526 63.7
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 3.7e-190 668.7 631 56.6
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 3.8e-187 658.7 510 64.3
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 7.2e-186 654.4 511 63.4
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 6.1e-185 651.4 506 63.4
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 7.9e-185 651.0 512 62.3
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.0e-184 650.6 515 62.7
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.4e-184 650.2 489 65.0
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 6.7e-184 647.9 506 62.8
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 3.7e-182 642.1 528 60.4
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 4.1e-181 638.6 512 61.5
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 5.3e-181 638.3 512 61.1
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 5.3e-181 638.3 514 62.6
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 3.4e-180 635.6 509 61.7
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 5.9e-180 634.8 511 62.4
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.0e-179 634.0 533 59.7
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 1.7e-179 633.3 509 61.7
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 1.7e-179 633.3 512 60.9
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 3.8e-179 632.1 512 60.5
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.4e-178 630.2 527 61.5
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.5e-178 629.4 527 61.5
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 3.2e-178 629.0 524 60.1
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 1.2e-177 627.1 512 59.6
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 3.6e-177 625.5 474 66.9
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 3.0e-176 622.5 509 61.9
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 3.9e-176 622.1 561 57.4
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 8.8e-176 620.9 470 66.0
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 9.7e-175 617.5 464 65.5
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 6.3e-174 614.8 468 66.5
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 2.4e-173 612.8 521 58.9
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 5.0e-171 605.1 464 65.3
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 2.3e-168 596.3 605 51.9
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 2.6e-167 592.8 530 57.4
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 7.5e-167 591.3 548 55.3
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 2.2e-166 589.7 447 64.9
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 9.1e-165 584.3 602 52.8
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 2.0e-164 583.2 513 59.3
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.3e-163 580.5 443 65.7
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 4.7e-161 572.0 445 63.4
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 3.1e-157 559.3 428 66.4
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.0e-156 556.6 379 71.8
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 5.9e-156 555.1 425 64.9
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 2.1e-153 546.6 450 60.9
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 2.3e-152 543.1 430 64.9
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 8.8e-152 541.2 474 58.4
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.3e-150 537.3 415 64.8
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 3.1e-149 532.7 575 49.7
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 5.0e-147 525.4 546 49.6
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 1.1e-146 524.2 407 63.9
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 2.4e-141 506.5 512 52.7
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 3.2e-141 506.1 410 62.9
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 5.9e-140 501.9 402 62.7
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 5.0e-139 498.8 412 61.4
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 1.4e-136 490.7 406 61.1
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 5.2e-136 488.8 385 62.9
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 3.2e-133 479.6 368 64.1
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 7.8e-132 474.9 443 57.3
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 7.1e-125 451.8 543 46.4
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 2.8e-121 439.9 361 60.1
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 1.1e-117 427.9 360 60.3
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 7.6e-111 405.2 385 56.6
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 6.9e-104 382.1 515 45.4
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.9e-101 374.0 238 73.9
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 2.0e-87 327.4 252 64.7
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 4.8e-81 306.2 509 36.9
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 2.7e-76 290.4 416 41.3
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 9.4e-69 265.4 238 56.7
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 9.4e-69 265.4 262 52.7
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.3e-65 255.0 153 83.7
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 5.0e-62 243.0 128 86.7
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 4.2e-61 240.0 141 80.9
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 1.8e-59 234.6 592 30.7
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 1.7e-49 201.4 153 63.4
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 2.2e-49 201.1 336 35.7
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.7e-44 184.1 95 91.6
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 4.1e-40 170.2 126 60.3
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 1.6e-39 168.3 110 72.7
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 7.7e-39 166.0 94 83.0
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 1.2e-36 158.7 140 60.0
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 1.2e-34 152.1 88 80.7
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.6e-26 124.4 73 78.1
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.3e-17 95.5 111 45.0
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.0e-14 85.9 52 73.1
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 6.2e-12 76.6 50 62.0


User provided reference genes

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