Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 0.0e+00 1268.1 723 100.0
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 0.0e+00 1250.7 723 98.6
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 4.9e-312 1074.3 716 87.7
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 3.5e-311 1071.2 771 83.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.1e-285 986.5 739 81.3
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.2e-255 886.7 758 73.4
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 7.7e-239 830.9 726 69.0
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.3e-225 786.9 713 66.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.5e-221 771.5 725 64.4
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 5.5e-221 771.5 727 65.5
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 1.5e-218 763.5 725 65.4
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.0e-218 763.1 725 63.7
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 9.8e-218 760.8 726 64.9
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 3.1e-216 755.7 713 64.4
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.1e-213 747.3 725 63.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.2e-212 743.8 726 63.2
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.0e-211 740.7 726 63.5
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 3.0e-211 739.2 728 63.2
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 4.0e-211 738.8 756 64.0
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 9.8e-210 734.2 727 63.4
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.8e-208 729.9 716 64.7
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 7.0e-208 728.0 726 62.9
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 1.0e-206 724.2 726 62.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 8.6e-206 721.1 732 62.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 1.1e-205 720.7 723 62.1
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.9e-205 719.9 733 60.4
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.5e-205 719.5 748 61.5
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 4.7e-204 715.3 725 62.6
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 8.0e-204 714.5 729 61.6
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.5e-202 710.3 726 60.7
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 7.5e-202 708.0 726 61.4
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 7.0e-200 701.4 727 60.5
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.6e-199 700.3 733 61.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 2.0e-199 699.9 723 61.0
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.7e-199 699.5 725 61.4
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 3.5e-199 699.1 737 59.4
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 1.7e-198 696.8 727 59.8
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.1e-196 689.9 735 60.4
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 4.7e-196 688.7 733 60.0
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 6.2e-196 688.3 728 60.9
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-195 687.2 733 59.2
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.3e-195 686.4 733 59.9
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 1.5e-194 683.7 729 59.9
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.4e-194 682.2 734 60.5
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.7e-193 680.2 620 66.5
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 1.4e-192 677.2 732 59.7
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.6e-191 673.7 726 59.0
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.5e-191 672.5 729 59.4
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.7e-190 670.2 740 59.3
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.8e-188 662.9 627 65.1
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 4.0e-187 659.1 716 60.8
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 5.2e-187 658.7 730 57.7
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 7.6e-186 654.8 747 56.6
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.9e-185 652.9 726 59.9
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 8.4e-185 651.4 745 56.4
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.4e-184 650.6 747 56.5
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 1.4e-184 650.6 699 60.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 4.1e-184 649.0 744 57.7
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 9.2e-184 647.9 660 62.1
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 1.6e-183 647.1 747 56.2
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.0e-182 644.4 728 57.8
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.5e-181 639.8 726 57.7
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.2e-180 637.5 716 59.2
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 3.6e-180 636.0 716 59.1
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.1e-179 634.4 717 58.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 5.2e-179 632.1 739 56.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.2e-178 630.9 737 57.9
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 2.6e-178 629.8 730 56.6
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 9.9e-178 627.9 723 56.6
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 1.1e-176 624.4 724 57.3
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 1.9e-176 623.6 728 56.7
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.1e-176 621.7 757 55.2
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 7.8e-175 618.2 726 56.9
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 3.0e-174 616.3 729 56.9
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.1e-172 610.1 758 54.4
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.2e-170 604.4 731 54.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-170 604.0 460 73.7
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 2.0e-170 603.6 724 54.7
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 7.6e-170 601.7 738 55.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 2.4e-168 596.7 740 53.6
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.2e-168 596.3 734 53.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 4.6e-167 592.4 742 53.8
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 4.6e-167 592.4 724 54.0
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 3.0e-166 589.7 772 54.7
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.7e-164 582.8 740 54.6
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 4.8e-164 582.4 730 54.2
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.8e-164 582.4 740 54.5
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 2.4e-163 580.1 729 53.6
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.5e-162 577.4 754 54.1
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 2.6e-162 576.6 740 53.9
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 5.8e-162 575.5 733 53.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 9.9e-162 574.7 728 54.8
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 1.4e-160 570.9 732 53.8
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 3.2e-160 569.7 813 50.6
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.5e-160 568.9 750 53.2
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.3e-158 563.5 732 53.1
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.1e-157 561.2 760 52.2
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.3e-156 557.8 717 52.7
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.1e-156 557.0 380 81.8
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 3.8e-153 546.2 748 50.0
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 4.2e-152 542.7 732 52.6
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-150 537.7 713 51.3
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.0e-146 523.9 751 50.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 4.2e-144 516.2 740 50.3
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 4.6e-143 512.7 637 54.5
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 6.5e-137 492.3 540 58.1
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 8.5e-137 491.9 738 49.1
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 2.1e-127 460.7 685 49.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 4.7e-127 459.5 449 64.1
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.8e-108 397.1 512 55.1
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.4e-107 394.0 512 54.9
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.2e-106 391.7 744 42.1
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 9.8e-93 345.5 229 82.1
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 3.7e-92 343.6 449 52.6
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 7.0e-91 339.3 240 80.8
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 4.3e-88 330.1 443 50.8
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.3e-80 303.5 231 74.9
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.8e-78 298.1 231 73.6
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-78 297.4 211 78.2
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-78 297.4 211 78.2
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.7e-76 290.4 186 83.3
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.6e-74 285.0 468 45.3
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 8.1e-71 272.7 400 49.0
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 2.4e-62 244.6 172 76.7
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 7.1e-59 233.0 652 34.4
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.3e-55 222.2 457 40.0
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.4e-53 214.2 136 84.6
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.2e-43 180.6 468 35.7
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 5.3e-38 163.7 414 38.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 4.5e-37 160.6 301 45.8
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.7e-36 158.7 201 54.7
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 1.9e-32 145.2 243 43.6
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.9e-32 145.2 114 69.3
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 1.8e-30 138.7 86 86.0
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 1.8e-25 122.1 216 46.8
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 2.5e-24 118.2 212 43.4
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-21 107.5 69 85.5
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-21 107.5 69 85.5
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.5e-21 107.5 69 85.5
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.8e-20 104.4 72 79.2
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 3.2e-19 101.3 294 35.4
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.2e-18 99.4 69 84.1
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 2.8e-15 88.2 65 70.8
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.5e-11 75.1 461 26.5
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 5.2e-09 67.4 70 61.4
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 6.7e-09 67.0 70 57.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 9.7e-08 63.2 364 25.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.7e-07 62.4 473 29.0
Lalb_Chr05g0221751 Lupinus albus HOM05D004897 ORTHO05D005928 6.3e-07 60.5 372 25.0
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 6.3e-07 60.5 360 24.2
MBI12_g30398_MAGBIO Magnolia biondii HOM05D004897 ORTHO05D005928 6.3e-07 60.5 363 26.7
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.2e-07 60.1 358 26.0
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 1.4e-06 59.3 66 57.6
A08p30510 Brassica napus HOM05D004897 ORTHO05D005928 2.4e-06 58.5 365 24.9
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 3.1e-06 58.2 359 24.8
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 3.1e-06 58.2 49 69.4
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 4.1e-06 57.8 371 24.5
Manes.14G170400 Manihot esculenta HOM05D004897 ORTHO05D005928 4.1e-06 57.8 369 27.1
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 7.0e-06 57.0 367 25.9
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 7.0e-06 57.0 367 26.7
TWI60G0918 Tripterygium wilfordii HOM05D004897 ORTHO05D005928 7.0e-06 57.0 358 24.9
Carub.0001s1783 Capsella rubella HOM05D004897 ORTHO05D005928 9.1e-06 56.6 366 25.7
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 9.1e-06 56.6 362 26.0


User provided reference genes

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