Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 3.7e-134 481.5 236 100.0
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 3.3e-130 468.4 236 98.3
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 7.6e-111 404.1 236 87.7
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 4.5e-47 192.2 144 61.8
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.0e-38 164.5 215 43.7
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.8e-27 127.1 127 47.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 3.4e-26 122.9 131 48.1
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.4e-26 122.5 129 51.2
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.4e-26 122.5 131 50.4
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 5.8e-26 122.1 131 48.1
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.8e-26 121.3 136 46.3
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.9e-25 119.8 126 49.2
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 3.7e-25 119.4 240 36.2
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 6.4e-25 118.6 126 49.2
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.4e-25 118.6 126 49.2
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.3e-25 118.2 142 47.2
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 8.3e-25 118.2 126 49.2
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.1e-24 117.9 140 46.4
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.1e-24 117.9 140 46.4
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 1.1e-24 117.9 127 47.2
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-24 117.5 140 46.4
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.9e-24 117.1 131 48.9
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 5.4e-24 115.5 127 46.5
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.6e-23 114.0 142 45.8
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 3.5e-23 112.8 147 38.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 3.5e-23 112.8 155 43.2
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 4.6e-23 112.5 146 45.9
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 4.6e-23 112.5 252 36.1
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.3e-22 110.9 133 48.1
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 1.7e-22 110.5 127 44.1
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 3.0e-22 109.8 125 44.8
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 6.6e-22 108.6 185 37.8
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 6.6e-22 108.6 126 47.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 8.6e-22 108.2 128 45.3
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 8.6e-22 108.2 133 41.4
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 8.6e-22 108.2 123 43.9
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 1.1e-21 107.8 127 44.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.5e-21 107.5 132 42.4
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.9e-21 107.1 132 42.4
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.5e-21 106.7 125 45.6
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.6e-21 105.5 207 34.3
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 5.6e-21 105.5 126 45.2
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 9.5e-21 104.8 235 34.5
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-20 104.4 132 40.9
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.1e-20 103.6 112 46.4
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-20 103.6 130 43.1
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-20 103.6 130 43.1
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.8e-20 103.2 160 40.0
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 3.6e-20 102.8 110 47.3
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.7e-20 102.4 174 39.1
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 4.7e-20 102.4 143 38.5
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 4.7e-20 102.4 130 43.1
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 4.7e-20 102.4 130 42.3
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 6.2e-20 102.1 149 36.2
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 6.2e-20 102.1 129 41.1
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 6.2e-20 102.1 127 43.3
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 8.1e-20 101.7 142 43.7
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 8.1e-20 101.7 225 33.8
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 8.1e-20 101.7 130 42.3
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 1.1e-19 101.3 124 41.9
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 1.1e-19 101.3 130 42.3
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.4e-19 100.9 150 38.0
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-19 100.9 129 40.3
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.8e-19 100.5 194 35.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.0e-19 99.4 123 41.5
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 5.2e-19 99.0 123 42.3
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 6.8e-19 98.6 128 43.8
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 6.8e-19 98.6 149 40.3
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 8.9e-19 98.2 133 39.1
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.2e-18 97.8 139 41.0
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.2e-18 97.8 139 41.0
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.2e-18 97.8 123 40.7
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.5e-18 97.4 126 43.7
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.0e-18 97.1 129 40.3
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 2.6e-18 96.7 225 33.8
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 2.6e-18 96.7 131 42.7
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 4.4e-18 95.9 136 40.4
Phvul.005G031300 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.4e-18 95.9 140 39.3
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 5.8e-18 95.5 135 42.2
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 5.8e-18 95.5 129 44.2
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 7.5e-18 95.1 129 40.3
Nitab4.5_0001004g0110 Nicotiana tabacum HOM05D002733 ORTHO05D003856 9.8e-18 94.7 161 40.4
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.3e-17 94.4 126 40.5
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 1.3e-17 94.4 122 41.0
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.7e-17 94.0 151 37.7
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.7e-17 94.0 149 36.2
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 2.2e-17 93.6 122 40.2
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 3.7e-17 92.8 135 41.5
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.7e-17 92.8 158 39.2
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 4.9e-17 92.4 157 43.3
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 8.3e-17 91.7 135 40.7
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 1.1e-16 91.3 115 40.0
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 1.4e-16 90.9 130 42.3
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.9e-16 90.5 135 40.7
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 1.9e-16 90.5 142 38.7
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.4e-16 90.1 131 40.5
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 3.2e-16 89.7 133 39.1
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 4.1e-16 89.4 132 37.9
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 5.4e-16 89.0 222 33.3
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 7.1e-16 88.6 237 30.0
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 9.2e-16 88.2 125 40.0
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.1e-15 87.0 110 41.8
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.1e-15 87.0 134 38.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.7e-15 86.7 110 41.8
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.5e-15 86.3 144 36.8
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.0e-15 85.5 133 36.1
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.0e-14 84.7 112 44.6
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.7e-14 84.0 104 38.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.3e-14 83.6 94 46.8
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.3e-14 83.6 131 37.4
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.9e-14 82.8 105 40.0
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 3.9e-14 82.8 130 34.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-14 82.4 136 36.0
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.1e-14 82.4 128 35.9
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 5.1e-14 82.4 232 32.3
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 6.6e-14 82.0 129 35.7
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 8.6e-14 81.6 130 36.2
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 8.6e-14 81.6 127 36.2
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 1.1e-13 81.3 130 36.9
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.5e-13 80.1 128 38.3
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 2.5e-13 80.1 112 42.0
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 3.3e-13 79.7 133 37.6
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.3e-13 79.3 132 34.8
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.3e-13 79.3 117 41.0
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 7.3e-13 78.6 133 37.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 9.5e-13 78.2 133 36.8
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-12 77.8 172 34.3
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.2e-12 77.8 129 38.0
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 1.2e-12 77.8 172 34.3
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-12 77.4 131 35.1
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 6.2e-12 75.5 108 36.1
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 6.2e-12 75.5 133 36.8
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.4e-11 74.3 110 40.9
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-11 73.6 129 33.3
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.0e-11 72.8 138 33.3
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 5.2e-11 72.4 127 36.2
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 5.2e-11 72.4 127 37.0
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 5.2e-11 72.4 127 37.0
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 5.2e-11 72.4 116 36.2
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-11 72.0 123 36.6
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.8e-11 72.0 100 39.0
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 6.8e-11 72.0 242 26.9
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 6.8e-11 72.0 127 37.0
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 6.8e-11 72.0 127 37.0
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.2e-10 71.2 242 26.9
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.2e-10 71.2 242 26.9
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.5e-10 70.9 98 43.9
ClCG08G014520 Citrullus lanatus HOM05D000001 ORTHO05D009054 2.0e-10 70.5 114 35.1
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-10 70.5 63 57.1
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 5.8e-10 68.9 105 37.1
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 9.9e-10 68.2 103 41.7
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 3.7e-09 66.2 127 37.0
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 3.7e-09 66.2 127 37.0
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.4e-09 65.5 107 34.6
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.4e-08 64.3 84 46.4
ECA233G4381 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.9e-08 63.9 184 29.9
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.4e-08 63.5 130 36.9
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 5.4e-08 62.4 97 39.2
ATR0594G191 Amborella trichopoda HOM05D020218 ORTHO05D013427 7.1e-08 62.0 111 30.6
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 7.1e-08 62.0 132 36.4
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 7.1e-08 62.0 132 36.4
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 7.1e-08 62.0 95 43.2
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.2e-08 61.6 130 30.0
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.1e-07 60.5 130 34.6
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.1e-07 60.5 74 40.5
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 2.7e-07 60.1 133 36.1
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.5e-07 59.7 133 36.1
BolC4t27593H Brassica oleracea HOM05D000896 ORTHO05D000594 4.6e-07 59.3 113 29.2
CDE02G0413 Ceratophyllum demersum HOM05D040791 ORTHO05D013425 1.0e-06 58.2 110 28.2
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-06 57.4 79 40.5
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.7e-06 57.4 75 37.3
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 2.3e-06 57.0 133 33.8
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-06 57.0 135 33.3
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 2.3e-06 57.0 133 33.8
MBI15_g37630_MAGBIO Magnolia biondii HOM05D018115 ORTHO05D017274 3.0e-06 56.6 101 33.7
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 8.6e-06 55.1 103 34.0


User provided reference genes

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