Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 0.0e+00 1321.2 690 100.0
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 0.0e+00 1244.6 690 94.5
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 0.0e+00 1216.1 690 92.5
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.9e-232 808.5 715 63.8
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.6e-230 803.1 746 62.9
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 8.4e-227 790.8 706 64.4
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.1e-169 600.1 762 49.6
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 6.8e-160 568.5 824 46.1
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 5.6e-146 522.3 831 43.4
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 7.8e-140 501.9 744 45.6
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.2e-127 461.5 823 41.3
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 6.9e-104 382.5 801 38.1
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.2e-103 381.7 801 38.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.6e-100 371.3 773 35.4
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 4.2e-93 346.7 773 36.0
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 3.1e-80 303.9 763 34.3
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 5.2e-75 286.6 702 33.9
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.1e-72 278.9 774 32.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.1e-72 278.9 753 32.3
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.2e-70 271.2 742 32.9
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 6.5e-70 269.6 751 33.6
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 1.6e-68 265.0 781 30.6
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 1.0e-67 262.3 734 32.0
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.4e-67 261.9 746 31.0
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 8.8e-67 259.2 740 32.8
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.2e-66 258.8 747 32.3
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.4e-66 257.3 742 32.1
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.4e-66 257.3 756 30.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.2e-65 254.6 672 33.3
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.7e-65 253.8 737 31.2
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 6.3e-65 253.1 743 31.6
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.1e-64 250.8 750 30.8
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 4.1e-64 250.4 783 30.7
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 2.0e-63 248.1 674 31.6
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 5.9e-63 246.5 704 30.7
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 1.7e-62 245.0 780 29.7
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.9e-61 241.5 742 29.8
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 4.4e-58 230.3 778 29.3
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 1.3e-57 228.8 749 29.1
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.7e-57 228.4 738 29.7
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 3.1e-56 224.2 723 29.7
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 7.0e-56 223.0 777 28.3
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 9.2e-56 222.6 738 29.7
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 4.5e-55 220.3 794 27.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.3e-54 218.8 814 28.6
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 1.7e-54 218.4 705 30.1
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.9e-54 217.6 782 29.3
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 8.6e-54 216.1 778 28.7
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 9.5e-53 212.6 722 31.3
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 9.5e-53 212.6 707 29.8
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.1e-52 209.9 786 28.2
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 8.0e-52 209.5 769 30.2
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 2.3e-51 208.0 793 28.4
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 8.9e-51 206.1 764 28.4
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.5e-50 205.3 793 29.6
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 7.5e-50 203.0 792 28.2
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 3.7e-49 200.7 751 27.7
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.4e-49 199.9 754 29.0
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 7.8e-47 193.0 766 26.6
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 5.0e-46 190.3 759 27.3
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.1e-45 189.1 605 29.6
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 2.5e-45 188.0 758 27.0
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 7.3e-45 186.4 735 27.3
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.2e-44 183.3 713 30.0
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.4e-43 182.2 713 29.0
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.3e-43 181.4 716 29.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 6.8e-43 179.9 790 27.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 9.8e-42 176.0 713 28.6
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.7e-41 175.3 719 28.9
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 6.4e-41 173.3 692 27.7
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 6.4e-41 173.3 756 26.5
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.9e-40 171.8 745 26.4
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 2.4e-40 171.4 742 28.6
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.0e-38 166.0 769 26.9
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 1.3e-38 165.6 769 28.0
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 2.3e-38 164.9 670 28.4
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.9e-38 164.1 773 25.6
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 6.6e-38 163.3 713 28.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.9e-37 161.8 767 25.4
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.1e-36 158.3 764 27.1
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.1e-35 156.0 775 25.7
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.4e-35 155.6 783 26.2
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 4.0e-35 154.1 675 28.9
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-34 152.5 542 29.9
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.5e-34 152.1 763 24.6
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 4.4e-34 150.6 749 26.0
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 7.5e-34 149.8 764 24.9
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.2e-33 148.3 405 34.1
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.4e-32 145.6 491 30.5
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 5.4e-32 143.7 664 24.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-29 135.6 214 45.8
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.3e-27 128.3 693 24.2
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 6.8e-27 126.7 713 25.0
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.5e-26 125.6 616 27.8
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.5e-26 125.6 791 26.7
Peaxi162Scf00057g00131 Petunia axillaris HOM05D002076 ORTHO05D006515 2.9e-25 121.3 105 61.0
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 5.4e-24 117.1 607 25.7
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 9.2e-24 116.3 688 24.6
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 1.7e-22 112.1 725 24.0
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 3.0e-22 111.3 186 37.6
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.5e-21 109.0 474 24.7
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.5e-21 108.2 748 23.4
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.3e-21 107.5 186 36.6
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.5e-18 99.0 736 24.9
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 7.6e-18 96.7 710 24.2
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.9e-18 96.3 235 27.7
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 5.4e-16 90.5 654 23.9
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 3.5e-15 87.8 644 24.4
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 3.5e-15 87.8 644 24.4
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.5e-15 87.8 300 31.0
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 7.8e-15 86.7 708 23.0
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 3.0e-14 84.7 422 27.3
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 5.1e-14 84.0 300 30.3
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 3.3e-13 81.3 668 23.8
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 4.3e-13 80.9 178 33.7
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 4.8e-12 77.4 652 25.0
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 6.2e-12 77.0 300 30.0
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 8.1e-12 76.6 668 23.7
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 1.8e-11 75.5 666 23.1
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 5.8e-10 70.5 164 32.3
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.3e-09 69.3 175 33.7
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 8.4e-09 66.6 672 23.7
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 4.2e-08 64.3 648 21.9
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 7.1e-08 63.5 589 22.6
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 2.1e-07 62.0 581 21.7
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 3.5e-07 61.2 258 25.2
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 3.5e-07 61.2 600 23.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 6.0e-07 60.5 167 28.7
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.0e-06 59.7 727 21.2
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 1.3e-06 59.3 213 25.8
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 3.0e-06 58.2 364 22.8
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.9e-06 57.8 263 26.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 5.1e-06 57.4 180 25.6
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 6.7e-06 57.0 194 24.2
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 6.7e-06 57.0 166 25.9
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 6.7e-06 57.0 169 23.7
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 8.7e-06 56.6 180 24.4


User provided reference genes

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