Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 1.5e-256 889.0 450 100.0
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 2.8e-255 884.8 450 99.6
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 1.2e-250 869.4 449 97.3
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 7.2e-227 790.4 458 89.1
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.6e-226 788.1 454 88.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.9e-211 739.2 454 84.8
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 2.4e-206 722.2 454 82.8
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 2.5e-187 659.1 459 74.9
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 2.8e-186 655.6 456 74.1
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 3.6e-186 655.2 459 74.7
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 3.0e-185 652.1 465 74.2
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 1.5e-184 649.8 465 73.1
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 4.4e-184 648.3 467 73.0
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 1.1e-182 643.7 470 73.0
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 1.1e-182 643.7 429 75.5
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 1.1e-182 643.7 460 73.9
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.4e-182 643.3 461 72.9
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 1.9e-182 642.9 460 73.9
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.9e-182 642.9 467 71.9
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 2.4e-182 642.5 457 72.6
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 7.0e-182 641.0 470 73.6
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 7.0e-182 641.0 464 72.4
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.5e-181 638.6 461 74.2
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 1.0e-180 637.1 466 71.5
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 2.3e-180 636.0 451 71.8
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.9e-180 635.2 461 74.0
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 6.6e-180 634.4 396 78.5
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 8.6e-180 634.0 447 72.5
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.9e-179 632.9 469 70.4
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 4.3e-179 631.7 458 73.1
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 5.6e-179 631.3 446 73.5
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 6.2e-178 627.9 473 69.3
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 6.2e-178 627.9 394 77.7
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 1.4e-177 626.7 461 72.2
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.4e-177 626.7 466 70.8
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 4.0e-177 625.2 467 69.6
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 5.2e-177 624.8 459 70.8
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 6.8e-177 624.4 457 70.9
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 2.0e-176 622.9 465 70.5
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 2.0e-176 622.9 443 71.3
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.6e-176 622.5 465 69.2
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 2.6e-176 622.5 467 69.8
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 3.4e-176 622.1 454 70.5
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 4.4e-176 621.7 365 83.8
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 7.5e-176 620.9 457 70.7
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.7e-175 619.8 409 75.3
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 2.2e-175 619.4 468 69.2
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 2.2e-175 619.4 469 69.3
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 8.3e-175 617.5 377 79.0
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.1e-174 617.1 445 72.4
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.1e-174 617.1 466 69.1
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 3.2e-174 615.5 377 79.8
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 5.4e-174 614.8 481 68.0
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 7.0e-174 614.4 449 71.0
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.2e-173 613.6 464 69.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.6e-173 613.2 378 79.4
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 3.5e-173 612.1 461 69.0
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 4.6e-173 611.7 450 69.8
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 1.0e-172 610.5 441 70.3
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.0e-172 610.5 465 68.8
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.3e-172 610.1 450 69.6
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 1.7e-172 609.8 456 68.6
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 1.7e-172 609.8 492 66.1
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 2.3e-172 609.4 472 67.6
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 5.0e-172 608.2 456 69.7
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 2.1e-170 602.8 438 70.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 6.2e-170 601.3 463 67.0
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.1e-169 600.5 460 69.3
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.8e-169 597.8 463 67.6
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 8.9e-169 597.4 463 67.6
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 3.4e-168 595.5 465 67.5
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 2.2e-167 592.8 378 77.5
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 1.1e-166 590.5 455 67.0
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 7.1e-166 587.8 404 72.3
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 2.7e-165 585.9 403 72.5
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 8.6e-164 580.9 390 73.8
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 8.6e-164 580.9 452 66.2
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 1.5e-163 580.1 454 67.4
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 1.9e-163 579.7 422 68.7
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 1.2e-162 577.0 409 70.4
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 2.8e-162 575.9 394 72.8
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 3.6e-162 575.5 441 66.4
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 3.6e-162 575.5 445 66.1
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 6.2e-162 574.7 392 73.5
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 1.1e-161 573.9 448 66.5
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 8.9e-161 570.9 457 65.2
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 1.2e-160 570.5 415 67.7
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 2.0e-160 569.7 447 66.2
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 3.2e-158 562.4 447 64.2
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 1.2e-157 560.5 466 64.8
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 3.0e-156 555.8 441 64.4
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 3.9e-156 555.4 441 64.4
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 3.9e-156 555.4 441 64.4
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 1.9e-155 553.1 458 62.4
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 1.9e-155 553.1 458 62.4
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 1.4e-153 547.0 462 64.7
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 5.4e-150 535.0 387 68.0
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 5.1e-148 528.5 461 59.7
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 3.3e-147 525.8 394 66.8
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 2.4e-142 509.6 457 58.6
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 3.5e-141 505.8 308 79.9
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.5e-139 499.6 338 74.9
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 9.9e-136 487.6 395 65.8
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.1e-113 414.5 283 74.2
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 5.9e-112 408.7 369 56.6
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 4.4e-107 392.5 376 52.9
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.6e-104 383.3 389 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 7.7e-104 381.7 389 49.4
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.0e-103 381.3 378 51.3
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 1.6e-96 357.5 374 50.3
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 1.9e-94 350.5 379 50.7
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.8e-82 309.3 322 50.6
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 4.5e-80 302.8 337 48.1
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.7e-79 300.8 386 46.6
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 7.5e-59 232.3 136 77.9
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 4.1e-49 199.9 293 44.7
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 1.1e-41 175.3 95 84.2
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.1e-38 165.2 110 72.7
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 3.3e-30 137.1 83 84.3
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 1.6e-29 134.8 82 81.7
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.6e-29 134.8 83 83.1
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 7.6e-27 125.9 349 30.4
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 9.9e-27 125.6 260 32.3
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 3.8e-26 123.6 89 73.0
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 6.7e-23 112.8 72 76.4
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 8.1e-21 105.9 149 50.3
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.0e-20 102.4 139 52.5
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 3.4e-19 100.5 353 26.1
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 2.5e-14 84.3 130 48.5
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.7e-13 80.5 72 61.1
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.8e-12 78.2 127 40.9
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 1.1e-06 58.9 107 41.1


User provided reference genes

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