Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 6.8e-216 753.8 412 100.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 3.3e-210 734.9 412 97.8
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 1.2e-201 706.4 395 94.2
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 1.5e-178 629.8 402 84.1
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 6.1e-164 581.3 393 80.9
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.8e-163 579.7 421 80.5
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 1.5e-146 523.5 413 76.3
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.5e-114 417.2 404 57.9
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 4.9e-113 412.1 411 58.6
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 9.2e-112 407.9 392 60.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 2.3e-110 403.3 404 56.2
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 3.0e-110 402.9 393 55.7
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 4.7e-108 395.6 385 59.7
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 7.5e-106 388.3 413 56.2
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 9.2e-104 381.3 406 54.2
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.7e-103 379.8 433 54.5
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 4.6e-103 379.0 382 59.9
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 1.3e-102 377.5 413 53.3
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 5.6e-101 372.1 401 55.1
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 3.6e-100 369.4 410 51.7
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 6.2e-100 368.6 398 55.3
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 6.2e-100 368.6 401 54.6
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 4.0e-99 365.9 410 53.9
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.2e-99 365.5 401 55.4
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 6.8e-99 365.2 394 53.3
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 6.8e-99 365.2 402 54.2
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.3e-97 358.2 417 52.3
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.4e-96 357.5 417 52.0
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 1.9e-96 357.1 408 52.9
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 3.2e-96 356.3 417 52.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.6e-95 354.0 393 54.2
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.7e-95 353.2 380 54.5
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 6.0e-95 352.1 405 51.9
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 6.0e-95 352.1 405 51.6
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 7.8e-95 351.7 383 54.3
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 6.6e-94 348.6 386 53.1
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 1.1e-93 347.8 400 51.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 5.6e-93 345.5 412 51.2
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 1.2e-92 344.4 409 52.8
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 6.2e-92 342.0 365 53.2
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 6.2e-92 342.0 415 49.9
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 3.1e-91 339.7 387 51.4
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 8.9e-91 338.2 411 51.8
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 1.5e-90 337.4 464 46.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 2.0e-90 337.0 405 51.6
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 2.6e-90 336.7 382 51.6
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.6e-90 336.7 374 52.9
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 3.4e-90 336.3 408 49.3
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.9e-89 333.2 411 51.3
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 3.7e-89 332.8 352 54.8
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.9e-88 330.5 412 49.8
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 5.4e-88 328.9 410 50.0
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 9.2e-88 328.2 449 47.9
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.2e-87 327.8 442 47.1
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.6e-87 327.4 377 52.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 1.3e-86 324.3 426 48.1
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 1.3e-86 324.3 455 45.1
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.5e-85 320.9 405 49.9
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 5.6e-85 318.9 390 51.5
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.6e-84 317.4 402 48.0
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.6e-84 317.4 464 44.4
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.1e-84 317.0 410 47.3
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.1e-83 314.7 410 47.3
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 2.4e-83 313.5 537 40.2
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 6.8e-83 312.0 395 48.4
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.5e-82 310.8 414 47.1
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 2.6e-82 310.1 404 47.5
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.3e-81 307.8 415 47.7
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.3e-81 307.8 415 47.7
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.3e-81 307.8 398 48.5
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.9e-81 306.6 475 44.2
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 3.8e-81 306.2 460 43.3
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 9.3e-80 301.6 413 46.7
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 9.3e-80 301.6 413 46.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 2.1e-79 300.4 403 46.4
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 4.6e-79 299.3 413 46.5
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 7.8e-79 298.5 402 46.5
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 1.0e-78 298.1 411 47.4
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 1.9e-77 293.9 401 47.4
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 9.6e-77 291.6 415 45.3
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.6e-76 290.8 419 44.9
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.8e-76 290.0 418 46.7
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.6e-76 289.7 333 51.7
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 1.8e-75 287.3 416 45.9
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.5e-74 284.3 423 43.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.6e-74 283.5 426 44.4
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 2.2e-73 280.4 434 43.3
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 2.4e-72 276.9 409 43.8
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 3.2e-72 276.6 409 45.7
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 3.9e-70 269.6 397 44.8
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 6.2e-68 262.3 321 48.3
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 5.3e-67 259.2 403 45.4
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.6e-63 246.1 209 61.7
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.4e-59 234.6 188 67.0
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.4e-58 229.9 191 62.3
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 2.7e-55 220.3 498 35.1
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 6.7e-54 215.7 254 50.0
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 5.5e-40 169.5 436 33.0
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 5.5e-40 169.5 436 33.0
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 6.3e-36 156.0 120 66.7
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 9.1e-35 152.1 510 30.0
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.6e-34 150.6 234 46.2
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-29 134.8 184 40.8
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.2e-26 125.2 167 46.1
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 3.5e-26 123.6 153 52.9
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.5e-24 118.2 85 64.7
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 4.2e-24 116.7 126 54.8
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 5.2e-22 109.8 126 54.8
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 1.7e-20 104.8 93 60.2
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 7.7e-18 95.9 86 52.3
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.2e-17 94.4 203 28.6
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 8.5e-17 92.4 379 26.9
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 2.5e-16 90.9 174 34.5
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-13 81.3 70 58.6
MD02G1040800 Malus domestica HOM05D006752 ORTHO05D008597 1.9e-08 64.7 78 43.6
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.4e-06 58.5 111 36.0


User provided reference genes

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