Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 2.4e-167 592.0 293 100.0
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.3e-162 574.3 284 99.6
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.3e-160 569.7 284 98.6
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 4.8e-155 551.2 284 94.7
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.0e-144 516.9 293 88.4
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 9.0e-138 493.8 281 86.5
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 5.0e-120 434.9 284 79.2
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 8.0e-118 427.6 281 76.2
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.4e-117 426.8 251 81.3
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 3.9e-117 425.2 266 77.8
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 2.6e-116 422.5 244 84.0
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.6e-116 422.5 252 79.8
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.3e-116 422.2 258 79.8
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 4.4e-116 421.8 275 74.9
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 7.4e-116 421.0 251 79.3
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 1.7e-115 419.9 253 77.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.7e-115 419.9 252 78.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.2e-115 419.5 246 82.1
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 8.2e-115 417.5 254 78.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.1e-114 417.2 277 74.4
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 1.1e-114 417.2 252 79.0
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.4e-114 416.8 249 79.5
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 2.4e-114 416.0 247 79.8
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 5.3e-114 414.8 253 78.7
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 5.3e-114 414.8 252 79.4
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 9.1e-114 414.1 252 80.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-113 413.7 256 77.0
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.0e-113 412.9 252 77.4
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.5e-113 412.1 251 78.9
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 4.5e-113 411.8 247 78.9
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.0e-112 410.6 280 73.6
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.7e-112 409.8 252 77.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.9e-112 409.1 242 81.8
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 6.5e-112 407.9 255 77.6
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.5e-111 406.8 276 69.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.5e-111 406.0 236 82.2
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.2e-110 403.7 271 72.7
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 1.6e-110 403.3 275 70.2
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.6e-110 403.3 251 77.3
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 2.7e-110 402.5 251 77.3
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 3.6e-110 402.1 277 70.0
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 6.1e-110 401.4 251 76.9
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 6.1e-110 401.4 251 76.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 6.1e-110 401.4 251 76.9
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 1.0e-109 400.6 251 75.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.8e-109 399.8 252 75.0
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.3e-109 399.4 251 76.9
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 2.3e-109 399.4 252 75.8
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 3.0e-109 399.1 255 78.4
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 3.0e-109 399.1 257 75.5
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 3.0e-109 399.1 264 75.8
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 5.2e-109 398.3 252 75.4
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 6.7e-109 397.9 251 76.1
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.8e-109 397.5 251 76.5
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 2.0e-108 396.4 252 75.0
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-106 389.8 277 68.6
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.8e-106 389.8 250 73.6
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.8e-106 389.8 275 69.1
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.8e-106 389.8 275 69.1
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 4.1e-106 388.7 299 65.9
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 7.0e-106 387.9 250 73.2
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 7.0e-106 387.9 250 73.2
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.5e-105 385.2 291 66.0
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.3e-104 383.6 274 70.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 2.2e-104 382.9 255 72.5
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 2.2e-104 382.9 244 76.2
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.9e-104 382.5 284 67.6
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.9e-104 382.5 284 67.6
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.9e-104 382.5 256 71.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 3.8e-104 382.1 253 73.1
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 4.2e-103 378.6 248 74.2
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 5.5e-103 378.3 251 72.1
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 5.5e-103 378.3 246 74.0
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 6.1e-102 374.8 244 75.0
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 8.0e-102 374.4 241 74.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.0e-101 372.5 254 69.7
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 6.8e-101 371.3 251 72.1
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 6.8e-101 371.3 252 72.2
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 1.5e-100 370.2 251 71.3
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 7.5e-100 367.9 249 71.5
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 1.3e-99 367.1 273 68.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.7e-99 366.7 249 71.9
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.7e-99 366.7 252 69.8
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 3.7e-99 365.5 256 69.9
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.5e-97 358.6 248 69.8
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 6.6e-96 354.8 215 80.9
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 7.2e-95 351.3 248 68.1
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 1.3e-91 340.5 279 61.6
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.3e-91 338.2 209 77.0
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 6.1e-86 321.6 275 59.6
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 3.1e-85 319.3 252 64.3
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 1.2e-84 317.4 256 64.5
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.6e-84 316.2 168 94.0
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 9.8e-84 314.3 248 66.5
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.4e-83 311.6 241 65.1
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.4e-82 309.7 309 56.3
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 3.2e-82 309.3 194 75.3
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.0e-82 308.1 309 56.0
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.5e-81 305.8 252 60.3
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 2.3e-80 303.1 194 72.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 2.8e-78 296.2 253 58.9
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.6e-78 295.8 158 92.4
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 6.2e-78 295.0 285 57.2
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.4e-77 293.9 248 61.3
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 1.8e-77 293.5 278 56.8
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 8.9e-77 291.2 250 59.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 4.4e-76 288.9 250 56.8
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.1e-73 280.0 278 57.2
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.0e-72 277.7 252 58.3
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 8.6e-64 248.1 351 48.4
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 6.2e-62 241.9 296 48.0
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.4e-58 228.8 170 68.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.4e-53 213.4 238 48.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 2.9e-51 206.5 264 43.2
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 6.6e-48 195.3 212 49.1
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 6.4e-43 178.7 278 38.5
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 4.6e-41 172.6 122 70.5
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.7e-40 168.3 110 70.0
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 5.5e-34 149.1 151 53.6
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-33 147.5 108 65.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 4.0e-29 132.9 76 82.9
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-26 124.4 131 51.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 4.6e-25 119.4 93 61.3
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.8e-19 99.8 84 54.8
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 8.5e-19 98.6 186 36.6
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-15 85.5 82 53.7
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.8e-14 83.6 53 69.8
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 6.3e-14 82.4 39 92.3
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-10 69.7 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 4.2e-10 69.7 37 86.5
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 2.7e-09 67.0 66 48.5
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 3.0e-08 63.5 70 45.7
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.7e-06 57.8 40 62.5
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.8e-06 57.0 35 74.3


User provided reference genes

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