Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g006440.2 Solanum lycopersicum HOM05D007805 ORTHO05D009877 2.2e-29 131.7 70 100.0
Sopen12g002380 Solanum pennellii HOM05D007805 ORTHO05D009877 2.2e-29 131.7 70 100.0
PGSC0003DMG400024282 Solanum tuberosum HOM05D007805 ORTHO05D009877 8.2e-29 129.8 70 98.6
Peaxi162Scf00047g02325 Petunia axillaris HOM05D007805 ORTHO05D009877 3.6e-24 114.4 70 87.1
Nitab4.5_0002015g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 1.3e-21 105.9 66 81.8
QL04p061619 Quercus lobata HOM05D007805 ORTHO05D009877 1.7e-18 95.5 65 78.5
CiPaw.03G113200 Carya illinoinensis HOM05D007805 ORTHO05D009877 2.2e-18 95.1 65 75.4
Cfa023524 Carpinus fangiana HOM05D007805 ORTHO05D009877 8.5e-18 93.2 70 74.3
Oeu003099.1 Olea europaea HOM05D007805 ORTHO05D009877 2.5e-17 91.7 66 74.2
Haze_13640 Corylus avellana HOM05D007805 ORTHO05D009877 1.6e-16 89.0 70 71.4
SalBow7G2318 Salvia bowleyana HOM05D007805 ORTHO05D009877 2.1e-16 88.6 72 72.2
MSTRG.6601 Avicennia marina HOM05D007805 ORTHO05D009877 2.7e-16 88.2 72 69.4
Ciclev10013268m.g Citrus clementina HOM05D007805 ORTHO05D009877 1.0e-15 86.3 67 68.7
Atru.chr8.992 Acer truncatum HOM05D007805 ORTHO05D009877 3.9e-15 84.3 66 69.7
Cpa.g.sc8.292 Carica papaya HOM05D007805 ORTHO05D009877 5.2e-15 84.0 66 68.2
Duzib133G0571 Durio zibethinus HOM05D007805 ORTHO05D009877 5.2e-15 84.0 64 67.2
ClCG07G010920 Citrullus lanatus HOM05D007805 ORTHO05D009877 6.7e-15 83.6 69 60.9
PSO675G4353 Papaver somniferum HOM05D007805 ORTHO05D009877 8.8e-15 83.2 71 67.6
TWI34G1833 Tripterygium wilfordii HOM05D007805 ORTHO05D009877 8.8e-15 83.2 70 64.3
Sed0026541 Sechium edule HOM05D007805 ORTHO05D009877 1.5e-14 82.4 69 63.8
Cc05_g00040 Coffea canephora HOM05D007805 ORTHO05D009877 2.0e-14 82.0 65 67.7
Gohir.D11G163200 Gossypium hirsutum HOM05D007805 ORTHO05D009877 2.0e-14 82.0 66 68.2
Gorai.007G173900 Gossypium raimondii HOM05D007805 ORTHO05D009877 2.0e-14 82.0 66 68.2
HanXRQChr13g0396951 Helianthus annuus HOM05D007805 ORTHO05D009877 2.6e-14 81.6 69 65.2
MD09G1139100 Malus domestica HOM05D007805 ORTHO05D009877 2.6e-14 81.6 69 65.2
PSO541G3237 Papaver somniferum HOM05D007805 ORTHO05D009877 2.6e-14 81.6 71 64.8
Dinv24693 Davidia involucrata HOM05D007805 ORTHO05D009877 3.3e-14 81.3 71 67.6
Gohir.A11G156100 Gossypium hirsutum HOM05D007805 ORTHO05D009877 3.3e-14 81.3 66 66.7
THA.LOC104808521 Tarenaya hassleriana HOM05D007805 ORTHO05D009877 4.4e-14 80.9 70 60.0
MELO3C016236.2 Cucumis melo HOM05D007805 ORTHO05D009877 7.4e-14 80.1 69 60.9
ECA233G5845 Erigeron canadensis HOM05D007805 ORTHO05D009877 7.4e-14 80.1 69 68.1
CSS0028935 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 9.7e-14 79.7 67 68.7
CSS0006336 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 1.3e-13 79.3 67 67.2
COL.COLO4_33759 Corchorus olitorius HOM05D007805 ORTHO05D009877 1.3e-13 79.3 65 66.2
CsaV3_4G007340 Cucumis sativus L. HOM05D007805 ORTHO05D009877 1.7e-13 79.0 69 59.4
Duzib138G1109 Durio zibethinus HOM05D007805 ORTHO05D009877 2.2e-13 78.6 65 64.6
Lsat_1_v5_gn_6_41501 Lactuca sativa HOM05D007805 ORTHO05D009877 3.7e-13 77.8 69 62.3
CSS0012461 Camellia sinensis var. sinensis HOM05D007805 ORTHO05D009877 6.3e-13 77.0 67 67.2
Migut.M00097 Erythranthe guttata HOM05D007805 ORTHO05D009877 6.3e-13 77.0 64 65.6
Manes.08G069000 Manihot esculenta HOM05D007805 ORTHO05D009877 6.3e-13 77.0 71 63.4
CDE02G0479 Ceratophyllum demersum HOM05D000623 ORTHO05D005779 8.2e-13 76.6 65 64.6
Rhsim12G0014500 Rhododendron simsii HOM05D007805 ORTHO05D009877 8.2e-13 76.6 66 66.7
CANSAT64G2225 Cannabis sativa HOM05D007805 ORTHO05D009877 1.1e-12 76.3 66 65.2
PGR142G2087 Punica granatum HOM05D007805 ORTHO05D009877 1.1e-12 76.3 66 63.6
FAN02G2902 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.8e-12 75.5 66 62.1
FAN09G3597 Fragaria x ananassa HOM05D007805 ORTHO05D009877 1.8e-12 75.5 66 62.1
RcHm_v2.0_Chr2g0153601 Rosa chinensis HOM05D007805 ORTHO05D009877 1.8e-12 75.5 66 62.1
TAR624G1043 Trochodendron aralioides HOM05D007805 ORTHO05D009877 1.8e-12 75.5 67 65.7
GSVIVG01015820001 Vitis vinifera HOM05D007805 ORTHO05D009877 1.8e-12 75.5 61 65.6
Carub.0003s2238 Capsella rubella HOM05D007805 ORTHO05D009877 3.1e-12 74.7 71 56.3
Thhalv10021880m.g Eutrema salsugineum HOM05D007805 ORTHO05D009877 3.1e-12 74.7 71 54.9
BcaB06g26324 Brassica carinata HOM05D007805 ORTHO05D009877 4.1e-12 74.3 71 54.9
BcaC05g28092 Brassica carinata HOM05D007805 ORTHO05D009877 5.3e-12 73.9 71 54.9
A05p26590 Brassica napus HOM05D007805 ORTHO05D009877 5.3e-12 73.9 71 54.9
C05p41160 Brassica napus HOM05D007805 ORTHO05D009877 5.3e-12 73.9 71 54.9
BolC5t32859H Brassica oleracea HOM05D007805 ORTHO05D009877 5.3e-12 73.9 71 54.9
BraA05t21534Z Brassica rapa HOM05D007805 ORTHO05D009877 5.3e-12 73.9 71 54.9
FvH4_6g39540 Fragaria vesca HOM05D007805 ORTHO05D009877 5.3e-12 73.9 66 60.6
FAN14G4838 Fragaria x ananassa HOM05D007805 ORTHO05D009877 5.3e-12 73.9 66 60.6
Potri.006G021100 Populus trichocarpa HOM05D007805 ORTHO05D009877 9.1e-12 73.2 69 59.4
Sp3g20010 Schrenkiella parvula HOM05D007805 ORTHO05D009877 1.2e-11 72.8 71 53.5
Prupe.3G186600 Prunus persica HOM05D007805 ORTHO05D009877 1.6e-11 72.4 65 58.5
Lj3g0006859 Lotus japonicus HOM05D007805 ORTHO05D009877 2.0e-11 72.0 68 60.3
Medtr4g076090 Medicago truncatula HOM05D007805 ORTHO05D009877 2.0e-11 72.0 65 63.1
Thecc.01G172700 Theobroma cacao HOM05D007805 ORTHO05D009877 2.0e-11 72.0 64 59.4
Aa31LG8G8770 Aethionema arabicum HOM05D000023 ORTHO05D000014 3.5e-11 71.2 68 57.4
Sabra06G0014500 Salix brachista HOM05D007805 ORTHO05D009877 3.5e-11 71.2 66 62.1
CARHR098100 Cardamine hirsuta HOM05D007805 ORTHO05D009877 4.5e-11 70.9 71 56.3
arahy.Tifrunner.gnm1.ann1.RTX0DF Arachis hypogaea HOM05D007805 ORTHO05D009877 5.9e-11 70.5 60 61.7
arahy.Tifrunner.gnm1.ann1.XU3UV1 Arachis hypogaea HOM05D007805 ORTHO05D009877 5.9e-11 70.5 60 61.7
MBI02_g35828_MAGBIO Magnolia biondii HOM05D007805 ORTHO05D009877 5.9e-11 70.5 63 63.5
TPR.G21248 Trifolium pratense HOM05D007805 ORTHO05D009877 7.7e-11 70.1 68 58.8
AT3G22210 Arabidopsis thaliana HOM05D007805 ORTHO05D009877 1.7e-10 68.9 71 54.9
Phvul.011G024400 Phaseolus vulgaris HOM05D007805 ORTHO05D009877 1.7e-10 68.9 69 60.9
AUR62017845 Chenopodium quinoa HOM05D007805 ORTHO05D009877 2.2e-10 68.6 64 57.8
AL3G36420 Arabidopsis lyrata HOM05D007805 ORTHO05D009877 2.9e-10 68.2 71 53.5
Glyma.12G022400 Glycine max HOM05D007805 ORTHO05D009877 3.8e-10 67.8 65 60.0
unitig_899.g15287 Utricularia gibba HOM05D007805 ORTHO05D009877 1.5e-09 65.9 64 50.0
Glyma.11G096300 Glycine max HOM05D007805 ORTHO05D009877 1.9e-09 65.5 69 56.5
Psat7g179400 Pisum sativum HOM05D007805 ORTHO05D009877 6.1e-08 60.5 64 56.2
Nitab4.5_0005023g0030 Nicotiana tabacum HOM05D007805 ORTHO05D009877 1.8e-07 58.9 41 78.0
Pp3c13_11150 Physcomitrium patens HOM05D007805 ORTHO05D009877 8.8e-07 56.6 66 56.1
EL10Ac6g15349 Beta vulgaris HOM05D007805 ORTHO05D009877 9.7e-06 53.1 47 51.1
Hund18262 Selenicereus undatus HOM05D007805 ORTHO05D009877 9.7e-06 53.1 37 64.9


User provided reference genes

Program Settings