Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 2.4e-66 255.4 131 100.0
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 7.3e-47 190.7 108 88.9
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 9.3e-26 120.6 124 56.5
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 3.9e-24 115.2 119 54.6
Sopen12g001620 Solanum pennellii HOM05D007156 ORTHO05D003871 1.5e-23 113.2 66 92.4
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.0e-19 100.5 124 46.8
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.8e-16 89.7 133 44.4
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.1e-15 87.0 131 42.7
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 9.6e-15 84.0 126 45.2
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 9.6e-15 84.0 129 43.4
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 2.8e-14 82.4 96 52.1
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 6.3e-14 81.3 119 39.5
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 1.1e-13 80.5 119 37.0
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.8e-13 79.7 119 45.4
Nitab4.5_0001134g0060 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.8e-13 79.7 124 43.5
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 5.3e-13 78.2 120 37.5
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 9.0e-13 77.4 123 41.5
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 9.0e-13 77.4 123 38.2
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 1.2e-12 77.0 52 69.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 1.5e-12 76.6 121 42.1
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 1.5e-12 76.6 121 38.0
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 1.5e-12 76.6 127 36.2
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.5e-12 76.6 123 41.5
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 2.6e-12 75.9 122 36.1
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 2.6e-12 75.9 126 38.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.4e-12 75.5 82 57.3
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 4.5e-12 75.1 60 56.7
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 4.5e-12 75.1 54 61.1
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 5.9e-12 74.7 124 39.5
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.3e-11 73.6 118 42.4
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.3e-11 73.6 52 63.5
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 1.7e-11 73.2 92 44.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 1.7e-11 73.2 73 53.4
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 2.2e-11 72.8 52 63.5
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 2.9e-11 72.4 83 55.4
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.9e-11 72.4 109 35.8
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 3.8e-11 72.0 124 39.5
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 3.8e-11 72.0 124 44.4
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 3.8e-11 72.0 123 41.5
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 6.5e-11 71.2 126 38.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 8.4e-11 70.9 115 41.7
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 8.4e-11 70.9 120 40.0
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.1e-10 70.5 115 41.7
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.1e-10 70.5 115 41.7
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.1e-10 70.5 126 36.5
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 1.4e-10 70.1 121 36.4
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 3.2e-10 68.9 124 35.5
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.2e-10 68.6 52 63.5
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 5.5e-10 68.2 55 58.2
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 5.5e-10 68.2 85 47.1
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 7.2e-10 67.8 119 40.3
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 7.2e-10 67.8 87 54.0
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 9.3e-10 67.4 45 62.2
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 9.3e-10 67.4 75 49.3
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 2.1e-09 66.2 104 41.3
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-09 66.2 104 41.3
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 2.1e-09 66.2 52 57.7
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 2.1e-09 66.2 124 37.9
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.7e-09 65.9 47 55.3
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.7e-09 65.9 53 64.2
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.5e-09 65.5 101 41.6
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 3.5e-09 65.5 57 54.4
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.6e-09 65.1 124 33.1
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 4.6e-09 65.1 124 33.1
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.1e-09 64.7 41 63.4
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.1e-09 64.7 88 40.9
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 6.1e-09 64.7 48 64.6
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 7.9e-09 64.3 119 37.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-08 63.9 84 42.9
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-08 63.9 84 42.9
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 1.0e-08 63.9 136 36.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-08 63.2 124 33.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.8e-08 63.2 52 51.9
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 3.9e-08 62.0 111 36.9
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.1e-08 61.6 42 59.5
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 5.1e-08 61.6 127 33.9
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 6.7e-08 61.2 40 62.5
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 8.7e-08 60.8 85 42.4
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 8.7e-08 60.8 85 42.4
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 1.1e-07 60.5 94 39.4
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 1.1e-07 60.5 139 33.1
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 1.5e-07 60.1 43 53.5
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 1.9e-07 59.7 52 53.8
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.9e-07 59.7 50 54.0
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.9e-07 59.7 40 62.5
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 2.5e-07 59.3 33 78.8
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.5e-07 59.3 36 69.4
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 3.3e-07 58.9 135 32.6
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 3.3e-07 58.9 53 56.6
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 4.3e-07 58.5 50 52.0
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.3e-07 58.5 41 53.7
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 4.3e-07 58.5 57 52.6
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 5.7e-07 58.2 60 48.3
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 5.7e-07 58.2 60 48.3
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 5.7e-07 58.2 108 41.7
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 5.7e-07 58.2 59 49.2
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 5.7e-07 58.2 94 39.4
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 7.4e-07 57.8 137 34.3
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 9.7e-07 57.4 87 41.4
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 9.7e-07 57.4 87 41.4
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 9.7e-07 57.4 88 40.9
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 9.7e-07 57.4 39 59.0
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 9.7e-07 57.4 111 35.1
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 9.7e-07 57.4 102 40.2
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.3e-06 57.0 92 38.0
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.3e-06 57.0 38 63.2
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.3e-06 57.0 96 36.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.3e-06 57.0 42 57.1
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 1.6e-06 56.6 56 48.2
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 1.6e-06 56.6 43 51.2
Aqoxy4G02532 Aquilegia oxysepala HOM05D007156 ORTHO05D003871 2.2e-06 56.2 132 31.8
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 2.2e-06 56.2 55 54.5
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.2e-06 56.2 59 50.8
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.8e-06 55.8 36 63.9
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 2.8e-06 55.8 56 48.2
Duzib160G0418 Durio zibethinus HOM05D001601 ORTHO05D006936 2.8e-06 55.8 45 57.8
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.8e-06 55.8 59 50.8
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 2.8e-06 55.8 59 50.8
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 3.7e-06 55.5 37 62.2
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 3.7e-06 55.5 51 54.9
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 3.7e-06 55.5 127 30.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 3.7e-06 55.5 35 65.7
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 4.8e-06 55.1 55 50.9
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.8e-06 55.1 121 35.5
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.8e-06 55.1 40 60.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 4.8e-06 55.1 40 60.0
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 4.8e-06 55.1 40 60.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 4.8e-06 55.1 42 59.5
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 4.8e-06 55.1 79 40.5
Thecc.06G206300 Theobroma cacao HOM05D001601 ORTHO05D006936 4.8e-06 55.1 45 60.0
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 6.3e-06 54.7 102 36.3
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 6.3e-06 54.7 56 46.4
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 6.3e-06 54.7 54 51.9
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 6.3e-06 54.7 84 38.1
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 6.3e-06 54.7 37 59.5
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 8.2e-06 54.3 87 41.4
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 8.2e-06 54.3 68 47.1
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 8.2e-06 54.3 49 51.0
Solyc02g079800.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.2e-06 54.3 43 48.8


User provided reference genes

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